RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 VPS33BQ9H267 617 aa23.42■■□□□ 1.34
SSU72-203ENST00000378725 PTPN12Q05209 780 aaKnown RBP23.41■■□□□ 1.34
SSU72-203ENST00000378725 SUPT20HQ8NEM7 779 aa23.41■■□□□ 1.34
SSU72-203ENST00000378725 ATP8B2P98198 1209 aa23.4■■□□□ 1.34
SSU72-203ENST00000378725 C9orf131Q5VYM1 1079 aa23.4■■□□□ 1.34
SSU72-203ENST00000378725 ZNF277Q9NRM2 450 aaPredicted RBP23.4■■□□□ 1.34
SSU72-203ENST00000378725 POLLQ9UGP5 575 aa23.4■■□□□ 1.34
SSU72-203ENST00000378725 RIPOR2Q9Y4F9 1068 aa23.4■■□□□ 1.34
SSU72-203ENST00000378725 SUPT16HQ9Y5B9 1047 aaKnown RBP23.4■■□□□ 1.34
SSU72-203ENST00000378725 XDHP47989 1333 aa23.39■■□□□ 1.34
SSU72-203ENST00000378725 CHRNDQ07001 517 aa23.39■■□□□ 1.33
SSU72-203ENST00000378725 KLHDC4Q8TBB5 520 aa23.39■■□□□ 1.33
SSU72-203ENST00000378725 TBC1D16Q8TBP0 767 aa23.39■■□□□ 1.33
SSU72-203ENST00000378725 PUS3Q9BZE2 481 aaKnown RBP23.39■■□□□ 1.33
SSU72-203ENST00000378725 ANKRD2Q9GZV1 360 aa23.39■■□□□ 1.33
SSU72-203ENST00000378725 C1orf115Q9H7X2 142 aa23.39■■□□□ 1.33
SSU72-203ENST00000378725 ANKIB1Q9P2G1 1089 aa23.39■■□□□ 1.33
SSU72-203ENST00000378725 SRGAP3O43295 1099 aa23.38■■□□□ 1.33
SSU72-203ENST00000378725 IARSP41252 1262 aaKnown RBP23.38■■□□□ 1.33
SSU72-203ENST00000378725 COPRSQ9NQ92 184 aa23.38■■□□□ 1.33
SSU72-203ENST00000378725 CNNM1Q9NRU3 951 aa23.38■■□□□ 1.33
SSU72-203ENST00000378725 RNF181Q9P0P0 153 aa23.38■■□□□ 1.33
SSU72-203ENST00000378725 UTRNP46939 3433 aa23.37■■□□□ 1.33
SSU72-203ENST00000378725 PNMA6EA0A0J9YXQ4 647 aa23.37■■□□□ 1.33
SSU72-203ENST00000378725 ATP2B4P23634 1241 aa23.37■■□□□ 1.33
SSU72-203ENST00000378725 GGA1Q9UJY5 639 aa23.37■■□□□ 1.33
SSU72-203ENST00000378725 FBXO3Q9UK99 471 aa23.37■■□□□ 1.33
SSU72-203ENST00000378725 DUOX1Q9NRD9 1551 aa23.36■■□□□ 1.33
SSU72-203ENST00000378725 POLA2Q14181 598 aa23.36■■□□□ 1.33
SSU72-203ENST00000378725 LRRC24Q50LG9 513 aa23.36■■□□□ 1.33
SSU72-203ENST00000378725 SSH3Q8TE77 659 aa23.36■■□□□ 1.33
SSU72-203ENST00000378725 LEMD3Q9Y2U8 911 aa23.36■■□□□ 1.33
SSU72-203ENST00000378725 LTBP1Q14766 1721 aa23.36■■□□□ 1.33
SSU72-203ENST00000378725 C6orf229H3BNL8 230 aa23.35■■□□□ 1.33
SSU72-203ENST00000378725 EYA2O00167 538 aa23.35■■□□□ 1.33
SSU72-203ENST00000378725 CIAO1O76071 339 aa23.35■■□□□ 1.33
SSU72-203ENST00000378725 KIAA2012Q0VF49 1180 aa23.35■■□□□ 1.33
SSU72-203ENST00000378725 CEP85Q6P2H3 762 aa23.35■■□□□ 1.33
SSU72-203ENST00000378725 MROH5Q6ZUA9 1318 aa23.34■■□□□ 1.33
SSU72-203ENST00000378725 WTIPA6NIX2 430 aaPredicted RBP23.34■■□□□ 1.33
SSU72-203ENST00000378725 UFL1O94874 794 aa23.34■■□□□ 1.33
SSU72-203ENST00000378725 WASHC4Q2M389 1173 aa23.34■■□□□ 1.33
SSU72-203ENST00000378725 RPAP2Q8IXW5 612 aaPredicted RBP23.34■■□□□ 1.33
SSU72-203ENST00000378725 EYA3Q99504 573 aa23.34■■□□□ 1.33
SSU72-203ENST00000378725 SBF1O95248 1867 aa23.34■■□□□ 1.33
SSU72-203ENST00000378725 AOC3Q16853 763 aa23.33■■□□□ 1.33
SSU72-203ENST00000378725 ATG9AQ7Z3C6 839 aa23.33■■□□□ 1.33
SSU72-203ENST00000378725 HELBQ8NG08 1087 aaPredicted RBP23.33■■□□□ 1.33
SSU72-203ENST00000378725 PA2G4Q9UQ80 394 aaKnown RBP23.33■■□□□ 1.33
SSU72-203ENST00000378725 ZC3H4Q9UPT8 1303 aaKnown RBP23.33■■□□□ 1.32
SSU72-203ENST00000378725 PPIP5K2O43314 1243 aa23.32■■□□□ 1.32
SSU72-203ENST00000378725 TAF5LO75529 589 aa23.32■■□□□ 1.32
SSU72-203ENST00000378725 LARGE2Q8N3Y3 721 aa23.32■■□□□ 1.32
SSU72-203ENST00000378725 CRBNQ96SW2 442 aa23.32■■□□□ 1.32
SSU72-203ENST00000378725 ZNF804BA4D1E1 1349 aa23.32■■□□□ 1.32
SSU72-203ENST00000378725 CHD4Q14839 1912 aa23.31■■□□□ 1.32
SSU72-203ENST00000378725 SPEF2Q9C093 1822 aa23.31■■□□□ 1.32
SSU72-203ENST00000378725 VGLL2Q8N8G2 317 aa23.31■■□□□ 1.32
SSU72-203ENST00000378725 ZC3H12CQ9C0D7 883 aaKnown RBP23.31■■□□□ 1.32
SSU72-203ENST00000378725 FZD9O00144 591 aa23.3■■□□□ 1.32
SSU72-203ENST00000378725 IL15P40933 162 aaPredicted RBP23.3■■□□□ 1.32
SSU72-203ENST00000378725 METTL24Q5JXM2 366 aa23.3■■□□□ 1.32
SSU72-203ENST00000378725 JDP2Q8WYK2 163 aa23.3■■□□□ 1.32
SSU72-203ENST00000378725 GPR101Q96P66 508 aaPredicted RBP23.3■■□□□ 1.32
SSU72-203ENST00000378725 SIL1Q9H173 461 aa23.3■■□□□ 1.32
SSU72-203ENST00000378725 RIMBP2O15034 1052 aa23.29■■□□□ 1.32
SSU72-203ENST00000378725 PDE8BO95263 885 aa23.29■■□□□ 1.32
SSU72-203ENST00000378725 YY1P25490 414 aa23.29■■□□□ 1.32
SSU72-203ENST00000378725 C15orf52Q6ZUT6 534 aaKnown RBP23.29■■□□□ 1.32
SSU72-203ENST00000378725 SIRT2Q8IXJ6 389 aa23.29■■□□□ 1.32
SSU72-203ENST00000378725 IRS2Q9Y4H2 1338 aa23.29■■□□□ 1.32
SSU72-203ENST00000378725 COL4A5P29400 1685 aa23.28■■□□□ 1.32
SSU72-203ENST00000378725 SNAP23O00161 211 aa23.28■■□□□ 1.32
SSU72-203ENST00000378725 UBE4AQ14139 1066 aa23.28■■□□□ 1.32
SSU72-203ENST00000378725 NIM1KQ8IY84 436 aa23.28■■□□□ 1.32
SSU72-203ENST00000378725 NOP58Q9Y2X3 529 aaKnown RBP23.28■■□□□ 1.32
SSU72-203ENST00000378725 MED23Q9ULK4 1368 aa23.27■■□□□ 1.32
SSU72-203ENST00000378725 KCNJ4P48050 445 aa23.27■■□□□ 1.32
SSU72-203ENST00000378725 ZNRF3Q9ULT6 936 aa23.27■■□□□ 1.32
SSU72-203ENST00000378725 TXNRD3Q86VQ6 643 aa23.26■■□□□ 1.31
SSU72-203ENST00000378725 CEP126Q9P2H0 1117 aa23.26■■□□□ 1.31
SSU72-203ENST00000378725 CCDC88AQ3V6T2 1871 aa23.26■■□□□ 1.31
SSU72-203ENST00000378725 DICER1Q9UPY3 1922 aaKnown RBP23.25■■□□□ 1.31
SSU72-203ENST00000378725 FGFR2P21802 821 aa23.25■■□□□ 1.31
SSU72-203ENST00000378725 G3BP1Q13283 466 aaKnown RBP eCLIP23.25■■□□□ 1.31
SSU72-203ENST00000378725 AAMPQ13685 434 aa23.25■■□□□ 1.31
SSU72-203ENST00000378725 HMMRO75330 724 aa23.24■■□□□ 1.31
SSU72-203ENST00000378725 SURF6O75683 361 aaKnown RBP23.24■■□□□ 1.31
SSU72-203ENST00000378725 KLRK1P26718 216 aa23.24■■□□□ 1.31
SSU72-203ENST00000378725 DOK7Q18PE1 504 aa23.24■■□□□ 1.31
SSU72-203ENST00000378725 GLTPD2A6NH11 291 aa23.23■■□□□ 1.31
SSU72-203ENST00000378725 YDJCA8MPS7 323 aa23.23■■□□□ 1.31
SSU72-203ENST00000378725 PUM3Q15397 648 aaKnown RBP23.23■■□□□ 1.31
SSU72-203ENST00000378725 DPY19L2Q6NUT2 758 aa23.23■■□□□ 1.31
SSU72-203ENST00000378725 COA1Q9GZY4 146 aa23.23■■□□□ 1.31
SSU72-203ENST00000378725 DBNDD1Q9H9R9 158 aa23.23■■□□□ 1.31
SSU72-203ENST00000378725 A0A1B0GUL6 1792 aa23.22■■□□□ 1.31
SSU72-203ENST00000378725 ECE2O60344 883 aa23.22■■□□□ 1.31
SSU72-203ENST00000378725 SASH1O94885 1247 aa23.22■■□□□ 1.31
SSU72-203ENST00000378725 EIF6P56537 245 aaKnown RBP23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms