RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 INSM1Q01101 510 aaPredicted RBP4.81□□□□□ -1.64
MCF2-202ENST00000370573 CNTNAP3BQ96NU0 1288 aa4.81□□□□□ -1.64
MCF2-202ENST00000370573 CNTNAP3Q9BZ76 1288 aa4.81□□□□□ -1.64
MCF2-202ENST00000370573 TMEM94Q12767 1356 aa4.81□□□□□ -1.64
MCF2-202ENST00000370573 ADGRL3Q9HAR2 1447 aa4.81□□□□□ -1.64
MCF2-202ENST00000370573 NKTRP30414 1462 aaKnown RBP4.81□□□□□ -1.64
MCF2-202ENST00000370573 ATP7BP35670 1465 aa4.81□□□□□ -1.64
MCF2-202ENST00000370573 USP32Q8NFA0 1604 aa4.81□□□□□ -1.64
MCF2-202ENST00000370573 VSIG8P0DPA2 414 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 GPC1P35052 558 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 KRT76Q01546 638 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 NCOA4Q13772 614 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 CCDC184Q52MB2 194 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 RNFT1Q5M7Z0 435 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 CC2D1BQ5T0F9 858 aaKnown RBP4.8□□□□□ -1.64
MCF2-202ENST00000370573 NBPF10Q6P3W6 841 aaKnown RBP4.8□□□□□ -1.64
MCF2-202ENST00000370573 NBPF15Q8N660 670 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 COL25A1Q9BXS0 654 aaPredicted RBP4.8□□□□□ -1.64
MCF2-202ENST00000370573 SERTAD1Q9UHV2 236 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 KNSTRNQ9Y448 316 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 A0A1W2PP64 1363 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 ANKRD36BQ8N2N9 1353 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 PPIP5K1Q6PFW1 1433 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 GPR25O00155 361 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 MAP7D1Q3KQU3 841 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 TMEM214Q6NUQ4 689 aaKnown RBP4.8□□□□□ -1.64
MCF2-202ENST00000370573 ZSCAN10Q96SZ4 725 aaPredicted RBP4.8□□□□□ -1.64
MCF2-202ENST00000370573 NSD3Q9BZ95 1437 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 C19orf44Q9H6X5 657 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 GPAMQ9HCL2 828 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 NINLQ9Y2I6 1382 aa4.8□□□□□ -1.64
MCF2-202ENST00000370573 RGPD8O14715 1765 aaPredicted RBP4.79□□□□□ -1.64
MCF2-202ENST00000370573 FMN2Q9NZ56 1722 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 LRRC7Q96NW7 1537 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 CPSF1Q10570 1443 aaKnown RBP4.79□□□□□ -1.64
MCF2-202ENST00000370573 SCNN1DP51172 638 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 GDF10P55107 478 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 TBC1D9Q6ZT07 1266 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 ZSCAN1Q8NBB4 408 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 PMFBP1Q8TBY8 1022 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 XAGE2Q96GT9 111 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 TIMMDC1Q9NPL8 285 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 TERF2IPQ9NYB0 399 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 XIRP1Q702N8 1843 aaKnown RBP4.79□□□□□ -1.64
MCF2-202ENST00000370573 CDC42BPGQ6DT37 1551 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 NCOA3Q9Y6Q9 1424 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 PARD3Q8TEW0 1356 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 NPC1L1Q9UHC9 1359 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 ACEP12821 1306 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 LORP23490 312 aaPredicted RBP4.79□□□□□ -1.64
MCF2-202ENST00000370573 PSME1Q06323 249 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 TLR1Q15399 786 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 DBN1Q16643 649 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 NOM1Q5C9Z4 860 aaKnown RBP4.79□□□□□ -1.64
MCF2-202ENST00000370573 ESCO1Q5FWF5 840 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 SV2AQ7L0J3 742 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 TAS1R3Q7RTX0 852 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 HDGFL2Q7Z4V5 671 aaPredicted RBP4.79□□□□□ -1.64
MCF2-202ENST00000370573 KIAA1522Q9P206 1035 aaPredicted RBP4.79□□□□□ -1.64
MCF2-202ENST00000370573 HRH3Q9Y5N1 445 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 TOPAZ1Q8N9V7 1692 aa4.79□□□□□ -1.64
MCF2-202ENST00000370573 ANKARQ7Z5J8 1434 aa4.78□□□□□ -1.64
MCF2-202ENST00000370573 KTN1Q86UP2 1357 aaKnown RBP4.78□□□□□ -1.64
MCF2-202ENST00000370573 USP17L5A8MUK1 530 aa4.78□□□□□ -1.64
MCF2-202ENST00000370573 CCER2I3L3R5 266 aa4.78□□□□□ -1.64
MCF2-202ENST00000370573 FYB1O15117 783 aa4.78□□□□□ -1.64
MCF2-202ENST00000370573 ATG7O95352 703 aa4.78□□□□□ -1.64
MCF2-202ENST00000370573 RALBP1Q15311 655 aa4.78□□□□□ -1.64
MCF2-202ENST00000370573 EML3Q32P44 896 aa4.78□□□□□ -1.64
MCF2-202ENST00000370573 PHLDB3Q6NSJ2 640 aa4.78□□□□□ -1.64
MCF2-202ENST00000370573 NANOS1Q8WY41 292 aaKnown RBP4.78□□□□□ -1.64
MCF2-202ENST00000370573 ORAI2Q96SN7 254 aa4.78□□□□□ -1.64
MCF2-202ENST00000370573 INHAP05111 366 aa4.78□□□□□ -1.64
MCF2-202ENST00000370573 FHDC1Q9C0D6 1143 aaPredicted RBP4.78□□□□□ -1.64
MCF2-202ENST00000370573 GNEQ9Y223 722 aaKnown RBP4.78□□□□□ -1.64
MCF2-202ENST00000370573 PCDHGA11Q9Y5H2 935 aa4.78□□□□□ -1.64
MCF2-202ENST00000370573 MAFBQ9Y5Q3 323 aaPredicted RBP4.78□□□□□ -1.64
MCF2-202ENST00000370573 POLR3AO14802 1390 aaPredicted RBP4.78□□□□□ -1.65
MCF2-202ENST00000370573 ATF3P18847 181 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 GTF2IP78347 998 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 C4orf17Q53FE4 359 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.77□□□□□ -1.65
MCF2-202ENST00000370573 GGNBP2Q9H3C7 697 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 DYRK1BQ9Y463 629 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 AKAP12Q02952 1782 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 C1orf167Q5SNV9 1468 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 MST1RQ04912 1400 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 SSH2Q76I76 1423 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 LTBP4Q8N2S1 1624 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 CGNL1Q0VF96 1302 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 TTC21BQ7Z4L5 1316 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 RBM47A0AV96 593 aaKnown RBP4.77□□□□□ -1.65
MCF2-202ENST00000370573 TMEM229AB2RXF0 380 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 GTF2E1P29083 439 aaPredicted RBP4.77□□□□□ -1.65
MCF2-202ENST00000370573 PPP2R1AP30153 589 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 NME9Q86XW9 330 aa4.77□□□□□ -1.65
MCF2-202ENST00000370573 NGDNQ8NEJ9 315 aaKnown RBP4.77□□□□□ -1.65
MCF2-202ENST00000370573 GTPBP3Q969Y2 492 aaKnown RBP4.77□□□□□ -1.65
MCF2-202ENST00000370573 ZNF837Q96EG3 531 aaPredicted RBP4.77□□□□□ -1.65
MCF2-202ENST00000370573 NOD1Q9Y239 953 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms