RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 REC8O95072 547 aa12.81□□□□□ -0.36
TPM3-212ENST00000368533 FKBP4Q02790 459 aaKnown RBP eCLIP12.81□□□□□ -0.36
TPM3-212ENST00000368533 ZNF34Q8IZ26 560 aa12.81□□□□□ -0.36
TPM3-212ENST00000368533 BBXQ8WY36 941 aaPredicted RBP12.81□□□□□ -0.36
TPM3-212ENST00000368533 NUP98P52948 1817 aa12.8□□□□□ -0.36
TPM3-212ENST00000368533 ST18O60284 1047 aa12.8□□□□□ -0.36
TPM3-212ENST00000368533 ERFEQ4G0M1 354 aa12.8□□□□□ -0.36
TPM3-212ENST00000368533 KRT27Q7Z3Y8 459 aa12.8□□□□□ -0.36
TPM3-212ENST00000368533 SEC62Q99442 399 aaKnown RBP12.8□□□□□ -0.36
TPM3-212ENST00000368533 UTP14AQ9BVJ6 771 aaKnown RBP12.8□□□□□ -0.36
TPM3-212ENST00000368533 CEP126Q9P2H0 1117 aa12.8□□□□□ -0.36
TPM3-212ENST00000368533 DDX49Q9Y6V7 483 aaKnown RBP12.8□□□□□ -0.36
TPM3-212ENST00000368533 GOLIM4O00461 696 aa12.8□□□□□ -0.36
TPM3-212ENST00000368533 CCDC129Q6ZRS4 1044 aa12.8□□□□□ -0.36
TPM3-212ENST00000368533 SH3TC1Q8TE82 1336 aa12.8□□□□□ -0.36
TPM3-212ENST00000368533 CPA1P15085 419 aa12.79□□□□□ -0.36
TPM3-212ENST00000368533 UQCRHLA0A096LP55 91 aa12.79□□□□□ -0.36
TPM3-212ENST00000368533 UQCRHP07919 91 aa12.79□□□□□ -0.36
TPM3-212ENST00000368533 MSNP26038 577 aaKnown RBP12.79□□□□□ -0.36
TPM3-212ENST00000368533 DDIT3P35638 169 aa12.79□□□□□ -0.36
TPM3-212ENST00000368533 MCTP1Q6DN14 999 aa12.79□□□□□ -0.36
TPM3-212ENST00000368533 A0A0D9SFI3 127 aa12.79□□□□□ -0.36
TPM3-212ENST00000368533 ANKRD18BA2A2Z9 1011 aa12.79□□□□□ -0.36
TPM3-212ENST00000368533 ERVV-1B6SEH8 477 aa12.79□□□□□ -0.36
TPM3-212ENST00000368533 ZPR1O75312 459 aa12.79□□□□□ -0.36
TPM3-212ENST00000368533 OFD1O75665 1012 aa12.79□□□□□ -0.36
TPM3-212ENST00000368533 TRIM28Q13263 835 aaKnown RBP12.79□□□□□ -0.36
TPM3-212ENST00000368533 NMIQ13287 307 aaPredicted RBP12.79□□□□□ -0.36
TPM3-212ENST00000368533 SKOR2Q2VWA4 1001 aaPredicted RBP12.79□□□□□ -0.36
TPM3-212ENST00000368533 ARHGEF1Q92888 912 aaKnown RBP12.79□□□□□ -0.36
TPM3-212ENST00000368533 IQSEC3Q9UPP2 1182 aaPredicted RBP12.79□□□□□ -0.36
TPM3-212ENST00000368533 TTC41PQ6P2S7 1318 aa12.78□□□□□ -0.36
TPM3-212ENST00000368533 PTH1RQ03431 593 aa12.78□□□□□ -0.36
TPM3-212ENST00000368533 AK7Q96M32 723 aa12.78□□□□□ -0.36
TPM3-212ENST00000368533 RTCBQ9Y3I0 505 aaKnown RBP12.78□□□□□ -0.36
TPM3-212ENST00000368533 PDE8AO60658 829 aa12.78□□□□□ -0.36
TPM3-212ENST00000368533 IL15P40933 162 aaPredicted RBP12.78□□□□□ -0.36
TPM3-212ENST00000368533 SCARF1Q14162 830 aa12.78□□□□□ -0.36
TPM3-212ENST00000368533 BTAF1O14981 1849 aa12.78□□□□□ -0.36
TPM3-212ENST00000368533 ZSCAN30Q86W11 494 aa12.77□□□□□ -0.36
TPM3-212ENST00000368533 BCL2L12Q9HB09 334 aa12.77□□□□□ -0.36
TPM3-212ENST00000368533 NEK4P51957 841 aa12.77□□□□□ -0.37
TPM3-212ENST00000368533 RFC4P35249 363 aa12.77□□□□□ -0.37
TPM3-212ENST00000368533 KCNJ4P48050 445 aa12.77□□□□□ -0.37
TPM3-212ENST00000368533 XAGE2Q96GT9 111 aa12.77□□□□□ -0.37
TPM3-212ENST00000368533 ATRNO75882 1429 aa12.77□□□□□ -0.37
TPM3-212ENST00000368533 AK9Q5TCS8 1911 aa12.77□□□□□ -0.37
TPM3-212ENST00000368533 ZBTB22O15209 634 aa12.76□□□□□ -0.37
TPM3-212ENST00000368533 BAG4O95429 457 aaKnown RBP12.76□□□□□ -0.37
TPM3-212ENST00000368533 NTSR2O95665 410 aa12.76□□□□□ -0.37
TPM3-212ENST00000368533 CSF1RP07333 972 aa12.76□□□□□ -0.37
TPM3-212ENST00000368533 ZNF589Q86UQ0 364 aaPredicted RBP12.76□□□□□ -0.37
TPM3-212ENST00000368533 TSC1Q92574 1164 aa12.76□□□□□ -0.37
TPM3-212ENST00000368533 MPHOSPH8Q99549 860 aa12.76□□□□□ -0.37
TPM3-212ENST00000368533 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.76□□□□□ -0.37
TPM3-212ENST00000368533 IFIT1P09914 478 aaKnown RBP12.76□□□□□ -0.37
TPM3-212ENST00000368533 NASPP49321 788 aaPredicted RBP12.76□□□□□ -0.37
TPM3-212ENST00000368533 COL9A3Q14050 684 aaPredicted RBP12.76□□□□□ -0.37
TPM3-212ENST00000368533 ZGPATQ8N5A5 531 aaKnown RBP12.76□□□□□ -0.37
TPM3-212ENST00000368533 EVI5LQ96CN4 794 aa12.76□□□□□ -0.37
TPM3-212ENST00000368533 TAF1P21675 1872 aa12.76□□□□□ -0.37
TPM3-212ENST00000368533 SGSM2O43147 1006 aa12.75□□□□□ -0.37
TPM3-212ENST00000368533 PKP1Q13835 747 aa12.75□□□□□ -0.37
TPM3-212ENST00000368533 NBPF5PQ86XG9 351 aaPredicted RBP12.75□□□□□ -0.37
TPM3-212ENST00000368533 ZNF652Q9Y2D9 606 aa12.75□□□□□ -0.37
TPM3-212ENST00000368533 PTMSP20962 102 aa12.75□□□□□ -0.37
TPM3-212ENST00000368533 NUCB2P80303 420 aa12.75□□□□□ -0.37
TPM3-212ENST00000368533 TTC39AQ5SRH9 613 aa12.75□□□□□ -0.37
TPM3-212ENST00000368533 PRPF40BQ6NWY9 871 aaKnown RBP12.75□□□□□ -0.37
TPM3-212ENST00000368533 RASEFQ8IZ41 740 aa12.75□□□□□ -0.37
TPM3-212ENST00000368533 TCEANC2Q96MN5 208 aa12.75□□□□□ -0.37
TPM3-212ENST00000368533 AOX1Q06278 1338 aa12.75□□□□□ -0.37
TPM3-212ENST00000368533 ATP2B3Q16720 1220 aa12.75□□□□□ -0.37
TPM3-212ENST00000368533 SETDB2Q96T68 719 aa12.75□□□□□ -0.37
TPM3-212ENST00000368533 RPS6KA4O75676 772 aa12.74□□□□□ -0.37
TPM3-212ENST00000368533 TAF6LQ9Y6J9 622 aa12.74□□□□□ -0.37
TPM3-212ENST00000368533 MCCP23508 829 aa12.74□□□□□ -0.37
TPM3-212ENST00000368533 TRAPPC3LQ5T215 181 aa12.74□□□□□ -0.37
TPM3-212ENST00000368533 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.74□□□□□ -0.37
TPM3-212ENST00000368533 RIPOR2Q9Y4F9 1068 aa12.74□□□□□ -0.37
TPM3-212ENST00000368533 ABCC12Q96J65 1359 aa12.73□□□□□ -0.37
TPM3-212ENST00000368533 APBA3O96018 575 aa12.73□□□□□ -0.37
TPM3-212ENST00000368533 FOXD4L6Q3SYB3 417 aaPredicted RBP12.73□□□□□ -0.37
TPM3-212ENST00000368533 CAVIN1Q6NZI2 390 aaKnown RBP12.73□□□□□ -0.37
TPM3-212ENST00000368533 FOXD4L3Q6VB84 417 aaPredicted RBP12.73□□□□□ -0.37
TPM3-212ENST00000368533 ANP32BQ92688 251 aaKnown RBP12.73□□□□□ -0.37
TPM3-212ENST00000368533 THSD7AQ9UPZ6 1657 aa12.73□□□□□ -0.37
TPM3-212ENST00000368533 CDHR2Q9BYE9 1310 aa12.73□□□□□ -0.37
TPM3-212ENST00000368533 USP42Q9H9J4 1324 aaKnown RBP12.73□□□□□ -0.37
TPM3-212ENST00000368533 ONECUT3O60422 494 aaPredicted RBP12.73□□□□□ -0.37
TPM3-212ENST00000368533 ATP5JP18859 108 aa12.73□□□□□ -0.37
TPM3-212ENST00000368533 ZAP70P43403 619 aa12.73□□□□□ -0.37
TPM3-212ENST00000368533 TPRNQ4KMQ1 711 aa12.73□□□□□ -0.37
TPM3-212ENST00000368533 PAG1Q9NWQ8 432 aa12.73□□□□□ -0.37
TPM3-212ENST00000368533 JAG2Q9Y219 1238 aa12.73□□□□□ -0.37
TPM3-212ENST00000368533 PRPF40AO75400 957 aaKnown RBP12.73□□□□□ -0.37
TPM3-212ENST00000368533 PHKA1P46020 1223 aa12.73□□□□□ -0.37
TPM3-212ENST00000368533 CELF1Q92879 486 aaKnown RBP12.73□□□□□ -0.37
TPM3-212ENST00000368533 PLA2G12BQ9BX93 195 aa12.73□□□□□ -0.37
TPM3-212ENST00000368533 LSG1Q9H089 658 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms