RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 CAVIN2O95810 425 aa16.88■□□□□ 0.29
CD48-201ENST00000368045 STK3Q13188 491 aa16.88■□□□□ 0.29
CD48-201ENST00000368045 NAA16Q6N069 864 aaPredicted RBP16.88■□□□□ 0.29
CD48-201ENST00000368045 DHX32Q7L7V1 743 aaKnown RBP16.88■□□□□ 0.29
CD48-201ENST00000368045 ATG9AQ7Z3C6 839 aa16.88■□□□□ 0.29
CD48-201ENST00000368045 CCDC191Q8NCU4 936 aa16.88■□□□□ 0.29
CD48-201ENST00000368045 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.88■□□□□ 0.29
CD48-201ENST00000368045 JARID2Q92833 1246 aaPredicted RBP16.88■□□□□ 0.29
CD48-201ENST00000368045 PRIMPOLQ96LW4 560 aa16.88■□□□□ 0.29
CD48-201ENST00000368045 TNMDQ9H2S6 317 aa16.88■□□□□ 0.29
CD48-201ENST00000368045 PAG1Q9NWQ8 432 aa16.88■□□□□ 0.29
CD48-201ENST00000368045 CFAP45Q9UL16 551 aa16.88■□□□□ 0.29
CD48-201ENST00000368045 PCDH11XQ9BZA7 1347 aa16.88■□□□□ 0.29
CD48-201ENST00000368045 PCDH11YQ9BZA8 1340 aa16.88■□□□□ 0.29
CD48-201ENST00000368045 HSP90B1P14625 803 aaKnown RBP16.87■□□□□ 0.29
CD48-201ENST00000368045 PIP4K2AP48426 406 aaPredicted RBP16.87■□□□□ 0.29
CD48-201ENST00000368045 HMGN5P82970 282 aaKnown RBP16.87■□□□□ 0.29
CD48-201ENST00000368045 NOLC1Q14978 699 aaKnown RBP eCLIP16.87■□□□□ 0.29
CD48-201ENST00000368045 TPRNQ4KMQ1 711 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 ZMYM1Q5SVZ6 1142 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 ATL3Q6DD88 541 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 DDX46Q7L014 1031 aaKnown RBP16.87■□□□□ 0.29
CD48-201ENST00000368045 MTERF4Q7Z6M4 381 aaKnown RBP16.87■□□□□ 0.29
CD48-201ENST00000368045 BRF1Q92994 677 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 AGXT2Q9BYV1 514 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 DACT1Q9NYF0 836 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 MRVI1Q9Y6F6 885 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 NBPF26B4DH59 902 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 H3BQV1 296 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 CHRNA2Q15822 529 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 IFFO2Q5TF58 517 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 NBPF14Q5TI25 921 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 NBPF10Q6P3W6 841 aaKnown RBP16.87■□□□□ 0.29
CD48-201ENST00000368045 CCDC129Q6ZRS4 1044 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 NBPF15Q8N660 670 aa16.87■□□□□ 0.29
CD48-201ENST00000368045 EYA2O00167 538 aa16.86■□□□□ 0.29
CD48-201ENST00000368045 JAK2O60674 1132 aa16.86■□□□□ 0.29
CD48-201ENST00000368045 DTNBO60941 627 aa16.86■□□□□ 0.29
CD48-201ENST00000368045 LRRFIP1Q32MZ4 808 aaKnown RBP16.86■□□□□ 0.29
CD48-201ENST00000368045 FAM173BQ6P4H8 233 aa16.86■□□□□ 0.29
CD48-201ENST00000368045 PRKCSHP14314 528 aaPredicted RBP16.85■□□□□ 0.29
CD48-201ENST00000368045 FGD1P98174 961 aa16.85■□□□□ 0.29
CD48-201ENST00000368045 SEC62Q99442 399 aaKnown RBP16.85■□□□□ 0.29
CD48-201ENST00000368045 SPEF2Q9C093 1822 aa16.85■□□□□ 0.29
CD48-201ENST00000368045 TTC12Q9H892 705 aaPredicted RBP16.85■□□□□ 0.29
CD48-201ENST00000368045 TFIP11Q9UBB9 837 aaKnown RBP16.85■□□□□ 0.29
CD48-201ENST00000368045 FBXO3Q9UK99 471 aa16.85■□□□□ 0.29
CD48-201ENST00000368045 EXOSC10Q01780 885 aaKnown RBP16.84■□□□□ 0.29
CD48-201ENST00000368045 NKX1-1Q15270 411 aaPredicted RBP16.84■□□□□ 0.29
CD48-201ENST00000368045 ZCRB1Q8TBF4 217 aaKnown RBP16.84■□□□□ 0.29
CD48-201ENST00000368045 CABLES1Q8TDN4 633 aa16.84■□□□□ 0.29
CD48-201ENST00000368045 CHMP3Q9Y3E7 222 aa16.84■□□□□ 0.29
CD48-201ENST00000368045 WDR17Q8IZU2 1322 aa16.84■□□□□ 0.29
CD48-201ENST00000368045 GOLIM4O00461 696 aa16.84■□□□□ 0.29
CD48-201ENST00000368045 AP5Z1O43299 807 aa16.84■□□□□ 0.29
CD48-201ENST00000368045 SCRN1Q12765 414 aa16.84■□□□□ 0.29
CD48-201ENST00000368045 STOX1Q6ZVD7 989 aa16.84■□□□□ 0.29
CD48-201ENST00000368045 FBXL16Q8N461 479 aa16.84■□□□□ 0.29
CD48-201ENST00000368045 MYRIPQ8NFW9 859 aa16.84■□□□□ 0.29
CD48-201ENST00000368045 DDX17Q92841 729 aaKnown RBP16.84■□□□□ 0.29
CD48-201ENST00000368045 NEUROD6Q96NK8 337 aa16.84■□□□□ 0.29
CD48-201ENST00000368045 NDUFB9Q9Y6M9 179 aa16.84■□□□□ 0.29
CD48-201ENST00000368045 NUP188Q5SRE5 1749 aa16.84■□□□□ 0.29
CD48-201ENST00000368045 RNF113AO15541 343 aaKnown RBP16.83■□□□□ 0.28
CD48-201ENST00000368045 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.83■□□□□ 0.28
CD48-201ENST00000368045 NSUN7Q8NE18 718 aaKnown RBP16.83■□□□□ 0.28
CD48-201ENST00000368045 TDRD7Q8NHU6 1098 aaKnown RBP16.83■□□□□ 0.28
CD48-201ENST00000368045 BICD2Q8TD16 824 aa16.83■□□□□ 0.28
CD48-201ENST00000368045 ZNF274Q96GC6 653 aaPredicted RBP16.83■□□□□ 0.28
CD48-201ENST00000368045 PGBD1Q96JS3 809 aa16.83■□□□□ 0.28
CD48-201ENST00000368045 ZNF830Q96NB3 372 aaPredicted RBP16.83■□□□□ 0.28
CD48-201ENST00000368045 KCPQ6ZWJ8 1503 aa16.83■□□□□ 0.28
CD48-201ENST00000368045 UBR2Q8IWV8 1755 aa16.83■□□□□ 0.28
CD48-201ENST00000368045 CTAGE5O15320 804 aa16.82■□□□□ 0.28
CD48-201ENST00000368045 IFIT1P09914 478 aaKnown RBP16.82■□□□□ 0.28
CD48-201ENST00000368045 PLCB2Q00722 1185 aa16.82■□□□□ 0.28
CD48-201ENST00000368045 DNTTIP2Q5QJE6 756 aaKnown RBP16.82■□□□□ 0.28
CD48-201ENST00000368045 TTLL7Q6ZT98 887 aa16.82■□□□□ 0.28
CD48-201ENST00000368045 KIAA1524Q8TCG1 905 aa16.82■□□□□ 0.28
CD48-201ENST00000368045 CBX8Q9HC52 389 aa16.82■□□□□ 0.28
CD48-201ENST00000368045 TNS2Q63HR2 1409 aa16.82■□□□□ 0.28
CD48-201ENST00000368045 CAMK4Q16566 473 aa16.82■□□□□ 0.28
CD48-201ENST00000368045 RCOR1Q9UKL0 485 aa16.82■□□□□ 0.28
CD48-201ENST00000368045 TJP1Q07157 1748 aa16.81■□□□□ 0.28
CD48-201ENST00000368045 PAPPAQ13219 1627 aa16.81■□□□□ 0.28
CD48-201ENST00000368045 ABCC12Q96J65 1359 aa16.81■□□□□ 0.28
CD48-201ENST00000368045 PTPDC1A2A3K4 754 aa16.81■□□□□ 0.28
CD48-201ENST00000368045 E7EWF7 191 aa16.81■□□□□ 0.28
CD48-201ENST00000368045 ZFYP08048 801 aaPredicted RBP16.81■□□□□ 0.28
CD48-201ENST00000368045 HSPD1P10809 573 aaKnown RBP16.81■□□□□ 0.28
CD48-201ENST00000368045 GTF2F1P35269 517 aaKnown RBP eCLIP16.81■□□□□ 0.28
CD48-201ENST00000368045 ANO6Q4KMQ2 910 aa16.81■□□□□ 0.28
CD48-201ENST00000368045 ZNF396Q96N95 335 aaPredicted RBP16.81■□□□□ 0.28
CD48-201ENST00000368045 CTNNA3Q9UI47 895 aa16.81■□□□□ 0.28
CD48-201ENST00000368045 MAST3O60307 1309 aa16.8■□□□□ 0.28
CD48-201ENST00000368045 SALL1Q9NSC2 1324 aa16.8■□□□□ 0.28
CD48-201ENST00000368045 NR1I2O75469 434 aa16.8■□□□□ 0.28
CD48-201ENST00000368045 TIMM10P62072 90 aa16.8■□□□□ 0.28
CD48-201ENST00000368045 CKAP2LQ8IYA6 745 aa16.8■□□□□ 0.28
CD48-201ENST00000368045 CEP126Q9P2H0 1117 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms