RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 KIF1BPQ96EK5 621 aa12.17□□□□□ -0.46
SYNE1-203ENST00000354674 UTP14AQ9BVJ6 771 aaKnown RBP12.17□□□□□ -0.46
SYNE1-203ENST00000354674 NIP7Q9Y221 180 aaKnown RBP eCLIP12.17□□□□□ -0.46
SYNE1-203ENST00000354674 LETM1O95202 739 aaPredicted RBP12.17□□□□□ -0.46
SYNE1-203ENST00000354674 KIF20AO95235 890 aa12.17□□□□□ -0.46
SYNE1-203ENST00000354674 SASS6Q6UVJ0 657 aa12.17□□□□□ -0.46
SYNE1-203ENST00000354674 RHPN1Q8TCX5 695 aa12.17□□□□□ -0.46
SYNE1-203ENST00000354674 SRP68Q9UHB9 627 aaKnown RBP12.17□□□□□ -0.46
SYNE1-203ENST00000354674 PA2G4Q9UQ80 394 aaKnown RBP12.17□□□□□ -0.46
SYNE1-203ENST00000354674 ZPR1O75312 459 aa12.16□□□□□ -0.46
SYNE1-203ENST00000354674 IRX3P78415 501 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-203ENST00000354674 C16orf71Q8IYS4 520 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-203ENST00000354674 C22orf23Q9BZE7 217 aa12.16□□□□□ -0.46
SYNE1-203ENST00000354674 OSBPL3Q9H4L5 887 aa12.16□□□□□ -0.46
SYNE1-203ENST00000354674 RBM27Q9P2N5 1060 aaKnown RBP12.16□□□□□ -0.46
SYNE1-203ENST00000354674 TUBGCP6Q96RT7 1819 aa12.16□□□□□ -0.46
SYNE1-203ENST00000354674 SH3TC1Q8TE82 1336 aa12.16□□□□□ -0.46
SYNE1-203ENST00000354674 IRS4O14654 1257 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-203ENST00000354674 TBC1D9BQ66K14 1250 aa12.16□□□□□ -0.46
SYNE1-203ENST00000354674 ERC1Q8IUD2 1116 aa12.16□□□□□ -0.46
SYNE1-203ENST00000354674 PDE8AO60658 829 aa12.16□□□□□ -0.46
SYNE1-203ENST00000354674 RBSNQ9H1K0 784 aa12.16□□□□□ -0.46
SYNE1-203ENST00000354674 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.15□□□□□ -0.46
SYNE1-203ENST00000354674 TRIM6-TRIM34B2RNG4 842 aa12.15□□□□□ -0.46
SYNE1-203ENST00000354674 RFC4P35249 363 aa12.15□□□□□ -0.46
SYNE1-203ENST00000354674 ILDR1Q86SU0 546 aaPredicted RBP12.15□□□□□ -0.46
SYNE1-203ENST00000354674 TTLL11Q8NHH1 800 aa12.15□□□□□ -0.46
SYNE1-203ENST00000354674 CAMKK2Q96RR4 588 aa12.15□□□□□ -0.46
SYNE1-203ENST00000354674 TRIM34Q9BYJ4 488 aa12.15□□□□□ -0.46
SYNE1-203ENST00000354674 GTPBP4Q9BZE4 634 aaKnown RBP12.15□□□□□ -0.46
SYNE1-203ENST00000354674 SASH1O94885 1247 aa12.15□□□□□ -0.46
SYNE1-203ENST00000354674 CTSWP56202 376 aa12.15□□□□□ -0.46
SYNE1-203ENST00000354674 MTERF4Q7Z6M4 381 aaKnown RBP12.15□□□□□ -0.46
SYNE1-203ENST00000354674 ZNF827Q17R98 1081 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 OTUD7AQ8TE49 926 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-203ENST00000354674 TMX1Q9H3N1 280 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 STAP2Q9UGK3 403 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 LRP5O75197 1615 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 APBB1O00213 710 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 BMP2KLQ5H9B9 411 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 SLC10A5Q5PT55 438 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 KLHDC4Q8TBB5 520 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 PPP1R9BQ96SB3 815 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 FBXO3Q9UK99 471 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 RTL9Q8NET4 1388 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 QSER1Q2KHR3 1735 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 G3BP1Q13283 466 aaKnown RBP eCLIP12.14□□□□□ -0.47
SYNE1-203ENST00000354674 CASZ1Q86V15 1759 aa12.14□□□□□ -0.47
SYNE1-203ENST00000354674 CIAO1O76071 339 aa12.13□□□□□ -0.47
SYNE1-203ENST00000354674 PHF14O94880 888 aa12.13□□□□□ -0.47
SYNE1-203ENST00000354674 HSP90B1P14625 803 aaKnown RBP12.13□□□□□ -0.47
SYNE1-203ENST00000354674 NOL7Q9UMY1 257 aaKnown RBP12.13□□□□□ -0.47
SYNE1-203ENST00000354674 AOX1Q06278 1338 aa12.13□□□□□ -0.47
SYNE1-203ENST00000354674 MCTP1Q6DN14 999 aa12.13□□□□□ -0.47
SYNE1-203ENST00000354674 ATG9AQ7Z3C6 839 aa12.13□□□□□ -0.47
SYNE1-203ENST00000354674 GYS1P13807 737 aa12.12□□□□□ -0.47
SYNE1-203ENST00000354674 PDE1AP54750 535 aa12.12□□□□□ -0.47
SYNE1-203ENST00000354674 PLCB2Q00722 1185 aa12.12□□□□□ -0.47
SYNE1-203ENST00000354674 GBP4Q96PP9 640 aa12.12□□□□□ -0.47
SYNE1-203ENST00000354674 SETDB2Q96T68 719 aa12.12□□□□□ -0.47
SYNE1-203ENST00000354674 NYXQ9GZU5 481 aa12.12□□□□□ -0.47
SYNE1-203ENST00000354674 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-203ENST00000354674 TTC22Q5TAA0 569 aa12.12□□□□□ -0.47
SYNE1-203ENST00000354674 IL1RAPL2Q9NP60 686 aa12.12□□□□□ -0.47
SYNE1-203ENST00000354674 FOXD4L6Q3SYB3 417 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-203ENST00000354674 FOXD4L3Q6VB84 417 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-203ENST00000354674 GREM2Q9H772 168 aa12.12□□□□□ -0.47
SYNE1-203ENST00000354674 CARMIL3Q8ND23 1372 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 RIC1Q4ADV7 1423 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 GSPT1P15170 499 aaKnown RBP12.11□□□□□ -0.47
SYNE1-203ENST00000354674 MX1P20591 662 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 TM4SF1P30408 202 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 CCDC57Q2TAC2 916 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 PDCL2Q8N4E4 241 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 ZKSCAN5Q9Y2L8 839 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 EYA2O00167 538 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 HCLS1P14317 486 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-203ENST00000354674 IFIT5Q13325 482 aaKnown RBP12.11□□□□□ -0.47
SYNE1-203ENST00000354674 OS9Q13438 667 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-203ENST00000354674 NFIXQ14938 502 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 ERFEQ4G0M1 354 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 FLAD1Q8NFF5 587 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 SIL1Q9H173 461 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 CHMP3Q9Y3E7 222 aa12.11□□□□□ -0.47
SYNE1-203ENST00000354674 ITGA6P23229 1130 aa12.1□□□□□ -0.47
SYNE1-203ENST00000354674 IL15P40933 162 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-203ENST00000354674 SF3B3Q15393 1217 aaKnown RBP12.1□□□□□ -0.47
SYNE1-203ENST00000354674 EZH2Q15910 746 aaKnown RBP12.1□□□□□ -0.47
SYNE1-203ENST00000354674 NUTM1Q86Y26 1132 aa12.1□□□□□ -0.47
SYNE1-203ENST00000354674 CLASRPQ8N2M8 674 aaKnown RBP12.1□□□□□ -0.47
SYNE1-203ENST00000354674 ZNF594Q96JF6 807 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-203ENST00000354674 GPR108Q9NPR9 543 aa12.1□□□□□ -0.47
SYNE1-203ENST00000354674 ABCC12Q96J65 1359 aa12.1□□□□□ -0.47
SYNE1-203ENST00000354674 EN1Q05925 392 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-203ENST00000354674 TFCP2L1Q9NZI6 479 aa12.1□□□□□ -0.47
SYNE1-203ENST00000354674 NRXN2Q9P2S2 1712 aa12.1□□□□□ -0.47
SYNE1-203ENST00000354674 ANKRD18BA2A2Z9 1011 aa12.09□□□□□ -0.47
SYNE1-203ENST00000354674 TPTE2Q6XPS3 522 aa12.09□□□□□ -0.47
SYNE1-203ENST00000354674 BICDL1Q6ZP65 573 aa12.09□□□□□ -0.47
SYNE1-203ENST00000354674 EP400NLQ6ZTU2 488 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms