RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 A0A1B0GUL7 405 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 G3V3G9 751 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 GYG1P46976 350 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 CHAF1AQ13111 956 aaPredicted RBP11.31□□□□□ -0.6
USP4-202ENST00000351842 DCAF8Q5TAQ9 597 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 BRIP1Q9BX63 1249 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 FHDC1Q9C0D6 1143 aaPredicted RBP11.31□□□□□ -0.6
USP4-202ENST00000351842 CDHR2Q9BYE9 1310 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 CSF1RP07333 972 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 HSP90B1P14625 803 aaKnown RBP11.31□□□□□ -0.6
USP4-202ENST00000351842 HMGB2P26583 209 aaKnown RBP11.31□□□□□ -0.6
USP4-202ENST00000351842 PDE6BP35913 854 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 POLA2Q14181 598 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 ATG9AQ7Z3C6 839 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 SMC5Q8IY18 1101 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 TUBGCP6Q96RT7 1819 aa11.31□□□□□ -0.6
USP4-202ENST00000351842 ATP2B3Q16720 1220 aa11.3□□□□□ -0.6
USP4-202ENST00000351842 PRPF40BQ6NWY9 871 aaKnown RBP11.3□□□□□ -0.6
USP4-202ENST00000351842 RBM17Q96I25 401 aaKnown RBP11.3□□□□□ -0.6
USP4-202ENST00000351842 RBM19Q9Y4C8 960 aaKnown RBP11.3□□□□□ -0.6
USP4-202ENST00000351842 NUP188Q5SRE5 1749 aa11.3□□□□□ -0.6
USP4-202ENST00000351842 UFL1O94874 794 aa11.3□□□□□ -0.6
USP4-202ENST00000351842 SRGNP10124 158 aa11.3□□□□□ -0.6
USP4-202ENST00000351842 NUCB1Q02818 461 aa11.3□□□□□ -0.6
USP4-202ENST00000351842 MINPP1Q9UNW1 487 aa11.3□□□□□ -0.6
USP4-202ENST00000351842 BCAMP50895 628 aa11.29□□□□□ -0.6
USP4-202ENST00000351842 DOK7Q18PE1 504 aa11.29□□□□□ -0.6
USP4-202ENST00000351842 CICQ96RK0 1608 aaPredicted RBP11.29□□□□□ -0.6
USP4-202ENST00000351842 COPRSQ9NQ92 184 aa11.29□□□□□ -0.6
USP4-202ENST00000351842 PPEF1O14829 653 aaPredicted RBP11.29□□□□□ -0.6
USP4-202ENST00000351842 IL15P40933 162 aaPredicted RBP11.29□□□□□ -0.6
USP4-202ENST00000351842 HSP90AB4PQ58FF6 505 aa11.29□□□□□ -0.6
USP4-202ENST00000351842 TNNI3KQ59H18 835 aa11.29□□□□□ -0.6
USP4-202ENST00000351842 TXNRD3Q86VQ6 643 aa11.29□□□□□ -0.6
USP4-202ENST00000351842 DBNLQ9UJU6 430 aaKnown RBP11.29□□□□□ -0.6
USP4-202ENST00000351842 FPGT-TNNI3KV9GXZ4 949 aa11.29□□□□□ -0.6
USP4-202ENST00000351842 IBTKQ9P2D0 1353 aaPredicted RBP11.28□□□□□ -0.6
USP4-202ENST00000351842 CHGBP05060 677 aa11.28□□□□□ -0.6
USP4-202ENST00000351842 MX1P20591 662 aa11.28□□□□□ -0.6
USP4-202ENST00000351842 GRAPQ13588 217 aa11.28□□□□□ -0.6
USP4-202ENST00000351842 SLFNL1Q499Z3 407 aa11.28□□□□□ -0.6
USP4-202ENST00000351842 GRAPLQ8TC17 118 aaPredicted RBP11.28□□□□□ -0.6
USP4-202ENST00000351842 SLC16A10Q8TF71 515 aa11.28□□□□□ -0.6
USP4-202ENST00000351842 ABCF2Q9UG63 623 aa11.28□□□□□ -0.6
USP4-202ENST00000351842 MTX1Q13505 466 aa11.28□□□□□ -0.6
USP4-202ENST00000351842 SF3B3Q15393 1217 aaKnown RBP11.28□□□□□ -0.6
USP4-202ENST00000351842 TBC1D9Q6ZT07 1266 aa11.28□□□□□ -0.6
USP4-202ENST00000351842 SOCS7O14512 581 aa11.28□□□□□ -0.6
USP4-202ENST00000351842 AAMPQ13685 434 aa11.28□□□□□ -0.6
USP4-202ENST00000351842 XAGE2Q96GT9 111 aa11.28□□□□□ -0.6
USP4-202ENST00000351842 PHKA1P46020 1223 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 GPSM2P81274 684 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 TTC39AQ5SRH9 613 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 MASTLQ96GX5 879 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 PLA2G12BQ9BX93 195 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 RIPOR2Q9Y4F9 1068 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 COL4A1P02462 1669 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 F8W031 263 aaPredicted RBP11.27□□□□□ -0.61
USP4-202ENST00000351842 PDE8BO95263 885 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 NPR1P16066 1061 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 PTGER2P43116 358 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 WASHC4Q2M389 1173 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 SLC10A5Q5PT55 438 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 DPP8Q6V1X1 898 aaPredicted RBP11.27□□□□□ -0.61
USP4-202ENST00000351842 ERC1Q8IUD2 1116 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 DBNDD1Q9H9R9 158 aa11.27□□□□□ -0.61
USP4-202ENST00000351842 GOLIM4O00461 696 aa11.26□□□□□ -0.61
USP4-202ENST00000351842 PLEKHM2Q8IWE5 1019 aa11.26□□□□□ -0.61
USP4-202ENST00000351842 TTLL6Q8N841 843 aa11.26□□□□□ -0.61
USP4-202ENST00000351842 ZNF277Q9NRM2 450 aaPredicted RBP11.26□□□□□ -0.61
USP4-202ENST00000351842 PDE1AP54750 535 aa11.26□□□□□ -0.61
USP4-202ENST00000351842 SCARF1Q14162 830 aa11.26□□□□□ -0.61
USP4-202ENST00000351842 RAB11FIP3O75154 756 aa11.25□□□□□ -0.61
USP4-202ENST00000351842 IFIT1P09914 478 aaKnown RBP11.25□□□□□ -0.61
USP4-202ENST00000351842 MPNDQ8N594 471 aa11.25□□□□□ -0.61
USP4-202ENST00000351842 BSDC1Q9NW68 430 aaPredicted RBP11.25□□□□□ -0.61
USP4-202ENST00000351842 SCN7AQ01118 1682 aa11.25□□□□□ -0.61
USP4-202ENST00000351842 IDH1O75874 414 aaKnown RBP11.25□□□□□ -0.61
USP4-202ENST00000351842 SLC5A1P13866 664 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 ALDH1B1P30837 517 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 PUM3Q15397 648 aaKnown RBP11.24□□□□□ -0.61
USP4-202ENST00000351842 ARHGAP27Q6ZUM4 889 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 ANTXR1Q9H6X2 564 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 PIM2Q9P1W9 311 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 NOP58Q9Y2X3 529 aaKnown RBP11.24□□□□□ -0.61
USP4-202ENST00000351842 ZNF804BA4D1E1 1349 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 ANKRD36CQ5JPF3 1778 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 TNRC6CQ9HCJ0 1690 aaKnown RBP11.24□□□□□ -0.61
USP4-202ENST00000351842 GPR162Q16538 588 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 CCDC158Q5M9N0 1113 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 GPATCH3Q96I76 525 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 MXD3Q9BW11 206 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 POLLQ9UGP5 575 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 GGA1Q9UJY5 639 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 AOC3Q16853 763 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 SLC4A8Q2Y0W8 1093 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 CRY2Q49AN0 593 aa11.24□□□□□ -0.61
USP4-202ENST00000351842 DALRD3Q5D0E6 543 aaKnown RBP11.24□□□□□ -0.61
USP4-202ENST00000351842 ZC3H12CQ9C0D7 883 aaKnown RBP11.24□□□□□ -0.61
USP4-202ENST00000351842 CCDC102BQ68D86 513 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms