RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 FUCA2Q9BTY2 467 aa26.27■■□□□ 1.8
UPF3A-201ENST00000351487 DSCC1Q9BVC3 393 aa26.27■■□□□ 1.8
UPF3A-201ENST00000351487 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.26■■□□□ 1.79
UPF3A-201ENST00000351487 GOLIM4O00461 696 aa26.26■■□□□ 1.79
UPF3A-201ENST00000351487 LRRC24Q50LG9 513 aa26.26■■□□□ 1.79
UPF3A-201ENST00000351487 ZMYM1Q5SVZ6 1142 aa26.26■■□□□ 1.79
UPF3A-201ENST00000351487 HMGB1P09429 215 aaKnown RBP26.25■■□□□ 1.79
UPF3A-201ENST00000351487 TIMM10P62072 90 aa26.25■■□□□ 1.79
UPF3A-201ENST00000351487 TTC6Q86TZ1 520 aa26.25■■□□□ 1.79
UPF3A-201ENST00000351487 NHSL1Q5SYE7 1610 aa26.25■■□□□ 1.79
UPF3A-201ENST00000351487 FBXO3Q9UK99 471 aa26.24■■□□□ 1.79
UPF3A-201ENST00000351487 A0A1B0GUL7 405 aa26.24■■□□□ 1.79
UPF3A-201ENST00000351487 OFD1O75665 1012 aa26.24■■□□□ 1.79
UPF3A-201ENST00000351487 Q6ZUG5 572 aa26.24■■□□□ 1.79
UPF3A-201ENST00000351487 STK3Q13188 491 aa26.23■■□□□ 1.79
UPF3A-201ENST00000351487 TRIM28Q13263 835 aaKnown RBP26.23■■□□□ 1.79
UPF3A-201ENST00000351487 TCIRG1Q13488 830 aa26.23■■□□□ 1.79
UPF3A-201ENST00000351487 STOX1Q6ZVD7 989 aa26.23■■□□□ 1.79
UPF3A-201ENST00000351487 FERMT3Q86UX7 667 aa26.23■■□□□ 1.79
UPF3A-201ENST00000351487 ZNF594Q96JF6 807 aaPredicted RBP26.23■■□□□ 1.79
UPF3A-201ENST00000351487 SCAND2PQ9GZW5 306 aaPredicted RBP26.22■■□□□ 1.79
UPF3A-201ENST00000351487 IFIT1P09914 478 aaKnown RBP26.22■■□□□ 1.79
UPF3A-201ENST00000351487 HCLS1P14317 486 aaPredicted RBP26.22■■□□□ 1.79
UPF3A-201ENST00000351487 TMOD3Q9NYL9 352 aa26.22■■□□□ 1.79
UPF3A-201ENST00000351487 STRN4Q9NRL3 753 aa26.21■■□□□ 1.79
UPF3A-201ENST00000351487 CCDC9Q9Y3X0 531 aaKnown RBP26.21■■□□□ 1.79
UPF3A-201ENST00000351487 PDZRN4Q6ZMN7 1036 aaPredicted RBP26.2■■□□□ 1.79
UPF3A-201ENST00000351487 VSIG10Q8N0Z9 540 aa26.2■■□□□ 1.79
UPF3A-201ENST00000351487 PLA2G12BQ9BX93 195 aa26.2■■□□□ 1.79
UPF3A-201ENST00000351487 ITGB4P16144 1822 aa26.2■■□□□ 1.79
UPF3A-201ENST00000351487 DHX32Q7L7V1 743 aaKnown RBP26.2■■□□□ 1.78
UPF3A-201ENST00000351487 TEX13AQ9BXU3 409 aaPredicted RBP26.2■■□□□ 1.78
UPF3A-201ENST00000351487 AGXT2Q9BYV1 514 aa26.2■■□□□ 1.78
UPF3A-201ENST00000351487 PUS3Q9BZE2 481 aaKnown RBP26.2■■□□□ 1.78
UPF3A-201ENST00000351487 MYH15Q9Y2K3 1946 aa26.2■■□□□ 1.78
UPF3A-201ENST00000351487 JAK2O60674 1132 aa26.19■■□□□ 1.78
UPF3A-201ENST00000351487 GIMAP6Q6P9H5 292 aa26.19■■□□□ 1.78
UPF3A-201ENST00000351487 LLPHQ9BRT6 129 aaKnown RBP26.19■■□□□ 1.78
UPF3A-201ENST00000351487 CEP126Q9P2H0 1117 aa26.19■■□□□ 1.78
UPF3A-201ENST00000351487 MAST3O60307 1309 aa26.19■■□□□ 1.78
UPF3A-201ENST00000351487 RNF113AO15541 343 aaKnown RBP26.19■■□□□ 1.78
UPF3A-201ENST00000351487 TPRNQ4KMQ1 711 aa26.19■■□□□ 1.78
UPF3A-201ENST00000351487 SMARCC2Q8TAQ2 1214 aa26.19■■□□□ 1.78
UPF3A-201ENST00000351487 BRF1Q92994 677 aa26.19■■□□□ 1.78
UPF3A-201ENST00000351487 PFKFB2O60825 505 aa26.18■■□□□ 1.78
UPF3A-201ENST00000351487 PCCAP05165 728 aaPredicted RBP26.18■■□□□ 1.78
UPF3A-201ENST00000351487 HSP90B1P14625 803 aaKnown RBP26.18■■□□□ 1.78
UPF3A-201ENST00000351487 EVA1CP58658 441 aa26.18■■□□□ 1.78
UPF3A-201ENST00000351487 CCDC57Q2TAC2 916 aa26.18■■□□□ 1.78
UPF3A-201ENST00000351487 FAM173BQ6P4H8 233 aa26.18■■□□□ 1.78
UPF3A-201ENST00000351487 HSPD1P10809 573 aaKnown RBP26.18■■□□□ 1.78
UPF3A-201ENST00000351487 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.17■■□□□ 1.78
UPF3A-201ENST00000351487 EXOSC10Q01780 885 aaKnown RBP26.17■■□□□ 1.78
UPF3A-201ENST00000351487 SCRN1Q12765 414 aa26.17■■□□□ 1.78
UPF3A-201ENST00000351487 SLFNL1Q499Z3 407 aa26.17■■□□□ 1.78
UPF3A-201ENST00000351487 USP25Q9UHP3 1055 aa26.17■■□□□ 1.78
UPF3A-201ENST00000351487 AKAP2Q9Y2D5 859 aa26.16■■□□□ 1.78
UPF3A-201ENST00000351487 RESTQ13127 1097 aa26.16■■□□□ 1.78
UPF3A-201ENST00000351487 SPATA32Q96LK8 384 aa26.16■■□□□ 1.78
UPF3A-201ENST00000351487 ANKRD36CQ5JPF3 1778 aa26.16■■□□□ 1.78
UPF3A-201ENST00000351487 MYH7P12883 1935 aa26.16■■□□□ 1.78
UPF3A-201ENST00000351487 ABCC12Q96J65 1359 aa26.15■■□□□ 1.78
UPF3A-201ENST00000351487 KIF6Q6ZMV9 814 aa26.15■■□□□ 1.78
UPF3A-201ENST00000351487 LEO1Q8WVC0 666 aaPredicted RBP26.15■■□□□ 1.78
UPF3A-201ENST00000351487 CSF1RP07333 972 aa26.15■■□□□ 1.78
UPF3A-201ENST00000351487 LRRFIP1Q32MZ4 808 aaKnown RBP26.15■■□□□ 1.78
UPF3A-201ENST00000351487 ZNF335Q9H4Z2 1342 aaPredicted RBP26.14■■□□□ 1.78
UPF3A-201ENST00000351487 PTMAP06454 111 aaKnown RBP26.14■■□□□ 1.78
UPF3A-201ENST00000351487 DNAJC10Q8IXB1 793 aa26.14■■□□□ 1.78
UPF3A-201ENST00000351487 ZBTB38Q8NAP3 1195 aaPredicted RBP26.14■■□□□ 1.78
UPF3A-201ENST00000351487 ZSCAN16Q9H4T2 348 aaPredicted RBP26.14■■□□□ 1.78
UPF3A-201ENST00000351487 MYH3P11055 1940 aa26.14■■□□□ 1.77
UPF3A-201ENST00000351487 NWD2Q9ULI1 1742 aa26.14■■□□□ 1.77
UPF3A-201ENST00000351487 CCDC192P0DO97 292 aa26.14■■□□□ 1.77
UPF3A-201ENST00000351487 FGD1P98174 961 aa26.14■■□□□ 1.77
UPF3A-201ENST00000351487 CCDC158Q5M9N0 1113 aa26.14■■□□□ 1.77
UPF3A-201ENST00000351487 PIGBQ92521 554 aa26.14■■□□□ 1.77
UPF3A-201ENST00000351487 LRRC2Q9BYS8 371 aa26.14■■□□□ 1.77
UPF3A-201ENST00000351487 NUP62CLQ9H1M0 184 aa26.14■■□□□ 1.77
UPF3A-201ENST00000351487 E7EWF7 191 aa26.13■■□□□ 1.77
UPF3A-201ENST00000351487 KDM4AO75164 1064 aa26.13■■□□□ 1.77
UPF3A-201ENST00000351487 TPM2P07951 284 aa26.13■■□□□ 1.77
UPF3A-201ENST00000351487 LIG1P18858 919 aa26.13■■□□□ 1.77
UPF3A-201ENST00000351487 TERF1P54274 439 aa26.13■■□□□ 1.77
UPF3A-201ENST00000351487 NSUN7Q8NE18 718 aaKnown RBP26.13■■□□□ 1.77
UPF3A-201ENST00000351487 ASAP1Q9ULH1 1129 aa26.13■■□□□ 1.77
UPF3A-201ENST00000351487 LRP6O75581 1613 aa26.13■■□□□ 1.77
UPF3A-201ENST00000351487 CDHR2Q9BYE9 1310 aa26.13■■□□□ 1.77
UPF3A-201ENST00000351487 M0R2C6 588 aa26.12■■□□□ 1.77
UPF3A-201ENST00000351487 ADCY5O95622 1261 aa26.12■■□□□ 1.77
UPF3A-201ENST00000351487 MAP3K15Q6ZN16 1313 aa26.12■■□□□ 1.77
UPF3A-201ENST00000351487 STARD3NLO95772 234 aa26.12■■□□□ 1.77
UPF3A-201ENST00000351487 ZFYP08048 801 aaPredicted RBP26.12■■□□□ 1.77
UPF3A-201ENST00000351487 HMGN5P82970 282 aaKnown RBP26.12■■□□□ 1.77
UPF3A-201ENST00000351487 MAP3K11Q16584 847 aa26.12■■□□□ 1.77
UPF3A-201ENST00000351487 FBXL16Q8N461 479 aa26.12■■□□□ 1.77
UPF3A-201ENST00000351487 XAGE2Q96GT9 111 aa26.12■■□□□ 1.77
UPF3A-201ENST00000351487 RIC1Q4ADV7 1423 aa26.12■■□□□ 1.77
UPF3A-201ENST00000351487 TTC39AQ5SRH9 613 aa26.11■■□□□ 1.77
UPF3A-201ENST00000351487 DDX19AQ9NUU7 478 aaKnown RBP26.11■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms