RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 TIMM10P62072 90 aa15.44■□□□□ 0.06
CLK3-201ENST00000345005 RAB3GAP1Q15042 981 aa15.44■□□□□ 0.06
CLK3-201ENST00000345005 CWC27Q6UX04 472 aaKnown RBP15.44■□□□□ 0.06
CLK3-201ENST00000345005 CLEC17AQ6ZS10 378 aa15.44■□□□□ 0.06
CLK3-201ENST00000345005 KIAA1211Q6ZU35 1233 aa15.44■□□□□ 0.06
CLK3-201ENST00000345005 HAUS7Q99871 368 aa15.44■□□□□ 0.06
CLK3-201ENST00000345005 CNNM1Q9NRU3 951 aa15.44■□□□□ 0.06
CLK3-201ENST00000345005 SPEF2Q9C093 1822 aa15.43■□□□□ 0.06
CLK3-201ENST00000345005 A0A1B0GUL7 405 aa15.43■□□□□ 0.06
CLK3-201ENST00000345005 ZPR1O75312 459 aa15.43■□□□□ 0.06
CLK3-201ENST00000345005 ANAPC15P60006 121 aa15.43■□□□□ 0.06
CLK3-201ENST00000345005 TRIM44Q96DX7 344 aaPredicted RBP15.43■□□□□ 0.06
CLK3-201ENST00000345005 FSD1Q9BTV5 496 aa15.43■□□□□ 0.06
CLK3-201ENST00000345005 HMGB2P26583 209 aaKnown RBP15.43■□□□□ 0.06
CLK3-201ENST00000345005 CCDC152Q4G0S7 254 aa15.43■□□□□ 0.06
CLK3-201ENST00000345005 TICAM2Q86XR7 235 aa15.43■□□□□ 0.06
CLK3-201ENST00000345005 RTL9Q8NET4 1388 aa15.42■□□□□ 0.06
CLK3-201ENST00000345005 C4AP0C0L4 1744 aa15.42■□□□□ 0.06
CLK3-201ENST00000345005 HSP90AA1P07900 732 aaKnown RBP15.42■□□□□ 0.06
CLK3-201ENST00000345005 METTL24Q5JXM2 366 aa15.42■□□□□ 0.06
CLK3-201ENST00000345005 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.42■□□□□ 0.06
CLK3-201ENST00000345005 ANP32BQ92688 251 aaKnown RBP15.42■□□□□ 0.06
CLK3-201ENST00000345005 CCDC158Q5M9N0 1113 aa15.41■□□□□ 0.06
CLK3-201ENST00000345005 GORABQ5T7V8 394 aa15.41■□□□□ 0.06
CLK3-201ENST00000345005 USPL1Q5W0Q7 1092 aa15.41■□□□□ 0.06
CLK3-201ENST00000345005 SPRYD3Q8NCJ5 442 aa15.41■□□□□ 0.06
CLK3-201ENST00000345005 GZF1Q9H116 711 aaPredicted RBP15.41■□□□□ 0.06
CLK3-201ENST00000345005 RFX7Q2KHR2 1363 aa15.41■□□□□ 0.06
CLK3-201ENST00000345005 COL24A1Q17RW2 1714 aa15.41■□□□□ 0.06
CLK3-201ENST00000345005 RAD50Q92878 1312 aa15.41■□□□□ 0.06
CLK3-201ENST00000345005 SLC27A3Q5K4L6 730 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 TRAPPC3LQ5T215 181 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 TNPO1Q92973 898 aaKnown RBP15.4■□□□□ 0.06
CLK3-201ENST00000345005 IL17RAQ96F46 866 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 SETDB2Q96T68 719 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 NYXQ9GZU5 481 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 IL25Q9H293 177 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 BCL2L12Q9HB09 334 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 UBR3Q6ZT12 1888 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 MROH5Q6ZUA9 1318 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 ESPNB1AK53 854 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 K7ELQ4 463 aaPredicted RBP15.4■□□□□ 0.06
CLK3-201ENST00000345005 TBC1D9BQ66K14 1250 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 ARHGEF1Q92888 912 aaKnown RBP15.4■□□□□ 0.06
CLK3-201ENST00000345005 XAGE2Q96GT9 111 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 DNAJC2Q99543 621 aaKnown RBP15.4■□□□□ 0.06
CLK3-201ENST00000345005 LSG1Q9H089 658 aaKnown RBP15.4■□□□□ 0.06
CLK3-201ENST00000345005 LRP5O75197 1615 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 RIC1Q4ADV7 1423 aa15.4■□□□□ 0.06
CLK3-201ENST00000345005 ST18O60284 1047 aa15.39■□□□□ 0.05
CLK3-201ENST00000345005 IFIT1P09914 478 aaKnown RBP15.39■□□□□ 0.05
CLK3-201ENST00000345005 HSPA4P34932 840 aa15.39■□□□□ 0.05
CLK3-201ENST00000345005 NMIQ13287 307 aaPredicted RBP15.39■□□□□ 0.05
CLK3-201ENST00000345005 ATP2B3Q16720 1220 aa15.39■□□□□ 0.05
CLK3-201ENST00000345005 SLC10A5Q5PT55 438 aa15.39■□□□□ 0.05
CLK3-201ENST00000345005 MPHOSPH8Q99549 860 aa15.39■□□□□ 0.05
CLK3-201ENST00000345005 SNRKQ9NRH2 765 aa15.39■□□□□ 0.05
CLK3-201ENST00000345005 TRIM37O94972 964 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 PDE8BO95263 885 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 ADRA2BP18089 450 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 GTF2E1P29083 439 aaPredicted RBP15.38■□□□□ 0.05
CLK3-201ENST00000345005 RFC4P35249 363 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 ERFEQ4G0M1 354 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 TTC39AQ5SRH9 613 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 VGLL2Q8N8G2 317 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 NAP1L5Q96NT1 182 aaPredicted RBP15.38■□□□□ 0.05
CLK3-201ENST00000345005 PAG1Q9NWQ8 432 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 SRP68Q9UHB9 627 aaKnown RBP15.38■□□□□ 0.05
CLK3-201ENST00000345005 MYH7P12883 1935 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 ABCC12Q96J65 1359 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 ARAP2Q8WZ64 1704 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 BICDL1Q6ZP65 573 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 SMIM5Q71RC9 77 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 KBTBD3Q8NAB2 608 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 EDC3Q96F86 508 aaKnown RBP15.38■□□□□ 0.05
CLK3-201ENST00000345005 LRRC4BQ9NT99 713 aa15.38■□□□□ 0.05
CLK3-201ENST00000345005 AKAP11Q9UKA4 1901 aa15.37■□□□□ 0.05
CLK3-201ENST00000345005 IGHMBP2P38935 993 aaKnown RBP15.37■□□□□ 0.05
CLK3-201ENST00000345005 NUCB2P80303 420 aa15.37■□□□□ 0.05
CLK3-201ENST00000345005 CCDC173Q0VFZ6 552 aa15.37■□□□□ 0.05
CLK3-201ENST00000345005 SF3B3Q15393 1217 aaKnown RBP15.37■□□□□ 0.05
CLK3-201ENST00000345005 FAM227BQ96M60 508 aa15.37■□□□□ 0.05
CLK3-201ENST00000345005 CDC5LQ99459 802 aaKnown RBP15.37■□□□□ 0.05
CLK3-201ENST00000345005 SEC31BQ9NQW1 1179 aa15.37■□□□□ 0.05
CLK3-201ENST00000345005 CD2BP2O95400 341 aaKnown RBP15.36■□□□□ 0.05
CLK3-201ENST00000345005 TPTE2Q6XPS3 522 aa15.36■□□□□ 0.05
CLK3-201ENST00000345005 GOLIM4O00461 696 aa15.36■□□□□ 0.05
CLK3-201ENST00000345005 TPM2P07951 284 aa15.36■□□□□ 0.05
CLK3-201ENST00000345005 ADORA1P30542 326 aa15.36■□□□□ 0.05
CLK3-201ENST00000345005 PUM3Q15397 648 aaKnown RBP15.36■□□□□ 0.05
CLK3-201ENST00000345005 LRRFIP1Q32MZ4 808 aaKnown RBP15.36■□□□□ 0.05
CLK3-201ENST00000345005 DDX46Q7L014 1031 aaKnown RBP15.36■□□□□ 0.05
CLK3-201ENST00000345005 NBPF5PQ86XG9 351 aaPredicted RBP15.36■□□□□ 0.05
CLK3-201ENST00000345005 ZNF512BQ96KM6 892 aaPredicted RBP15.36■□□□□ 0.05
CLK3-201ENST00000345005 CWC22Q9HCG8 908 aaKnown RBP15.36■□□□□ 0.05
CLK3-201ENST00000345005 PALD1Q9ULE6 856 aa15.36■□□□□ 0.05
CLK3-201ENST00000345005 CCDC171Q6TFL3 1326 aa15.35■□□□□ 0.05
CLK3-201ENST00000345005 TAF1P21675 1872 aa15.35■□□□□ 0.05
CLK3-201ENST00000345005 A0A0D9SFI3 127 aa15.35■□□□□ 0.05
CLK3-201ENST00000345005 AMIGO3Q86WK7 504 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 230.9 ms