RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 PARP10Q53GL7 1025 aa18■□□□□ 0.47
TPM3-208ENST00000341485 SNRKQ9NRH2 765 aa18■□□□□ 0.47
TPM3-208ENST00000341485 WDR33Q9C0J8 1336 aaKnown RBP17.99■□□□□ 0.47
TPM3-208ENST00000341485 FAM177BA6PVY3 158 aa17.99■□□□□ 0.47
TPM3-208ENST00000341485 NASPP49321 788 aaPredicted RBP17.99■□□□□ 0.47
TPM3-208ENST00000341485 SYNE4Q8N205 404 aa17.99■□□□□ 0.47
TPM3-208ENST00000341485 JAKMIP1Q96N16 626 aaKnown RBP17.99■□□□□ 0.47
TPM3-208ENST00000341485 TMEM63CQ9P1W3 806 aa17.99■□□□□ 0.47
TPM3-208ENST00000341485 NIP7Q9Y221 180 aaKnown RBP eCLIP17.99■□□□□ 0.47
TPM3-208ENST00000341485 TAF1LQ8IZX4 1826 aa17.99■□□□□ 0.47
TPM3-208ENST00000341485 TRIM37O94972 964 aa17.99■□□□□ 0.47
TPM3-208ENST00000341485 SUSD4Q5VX71 490 aa17.99■□□□□ 0.47
TPM3-208ENST00000341485 CCDC85AQ96PX6 553 aaPredicted RBP17.99■□□□□ 0.47
TPM3-208ENST00000341485 UTP14AQ9BVJ6 771 aaKnown RBP17.99■□□□□ 0.47
TPM3-208ENST00000341485 TM6SF1Q9BZW5 370 aa17.99■□□□□ 0.47
TPM3-208ENST00000341485 RTCBQ9Y3I0 505 aaKnown RBP17.99■□□□□ 0.47
TPM3-208ENST00000341485 RBM8AQ9Y5S9 174 aaKnown RBP17.99■□□□□ 0.47
TPM3-208ENST00000341485 A0A0D9SFI3 127 aa17.98■□□□□ 0.47
TPM3-208ENST00000341485 LARGE1O95461 756 aa17.98■□□□□ 0.47
TPM3-208ENST00000341485 RXRBP28702 533 aa17.98■□□□□ 0.47
TPM3-208ENST00000341485 TAF7LQ5H9L4 462 aa17.98■□□□□ 0.47
TPM3-208ENST00000341485 FSD1Q9BTV5 496 aa17.98■□□□□ 0.47
TPM3-208ENST00000341485 ZSWIM6Q9HCJ5 1215 aa17.98■□□□□ 0.47
TPM3-208ENST00000341485 PDRG1Q9NUG6 133 aa17.98■□□□□ 0.47
TPM3-208ENST00000341485 TFCP2Q12800 502 aa17.97■□□□□ 0.47
TPM3-208ENST00000341485 VPS53Q5VIR6 699 aa17.97■□□□□ 0.47
TPM3-208ENST00000341485 CREB3L3Q68CJ9 461 aa17.97■□□□□ 0.47
TPM3-208ENST00000341485 CLEC4GQ6UXB4 293 aa17.97■□□□□ 0.47
TPM3-208ENST00000341485 MAP4K1Q92918 833 aa17.97■□□□□ 0.47
TPM3-208ENST00000341485 SH3TC1Q8TE82 1336 aa17.97■□□□□ 0.47
TPM3-208ENST00000341485 PDE8AO60658 829 aa17.97■□□□□ 0.47
TPM3-208ENST00000341485 MBD3O95983 291 aa17.97■□□□□ 0.47
TPM3-208ENST00000341485 CSF1RP07333 972 aa17.97■□□□□ 0.47
TPM3-208ENST00000341485 CTSWP56202 376 aa17.97■□□□□ 0.47
TPM3-208ENST00000341485 IFIT5Q13325 482 aaKnown RBP17.97■□□□□ 0.47
TPM3-208ENST00000341485 ZNF594Q96JF6 807 aaPredicted RBP17.97■□□□□ 0.47
TPM3-208ENST00000341485 AK7Q96M32 723 aa17.97■□□□□ 0.47
TPM3-208ENST00000341485 MED23Q9ULK4 1368 aa17.96■□□□□ 0.47
TPM3-208ENST00000341485 C4BP0C0L5 1744 aa17.96■□□□□ 0.47
TPM3-208ENST00000341485 TNNI3KQ59H18 835 aa17.96■□□□□ 0.47
TPM3-208ENST00000341485 SMIM5Q71RC9 77 aa17.96■□□□□ 0.47
TPM3-208ENST00000341485 DBNLQ9UJU6 430 aaKnown RBP17.96■□□□□ 0.47
TPM3-208ENST00000341485 CYP46A1Q9Y6A2 500 aa17.96■□□□□ 0.47
TPM3-208ENST00000341485 FPGT-TNNI3KV9GXZ4 949 aa17.96■□□□□ 0.47
TPM3-208ENST00000341485 MYH3P11055 1940 aa17.96■□□□□ 0.46
TPM3-208ENST00000341485 ZPR1O75312 459 aa17.95■□□□□ 0.46
TPM3-208ENST00000341485 IL15P40933 162 aaPredicted RBP17.95■□□□□ 0.46
TPM3-208ENST00000341485 RBSNQ9H1K0 784 aa17.95■□□□□ 0.46
TPM3-208ENST00000341485 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.95■□□□□ 0.46
TPM3-208ENST00000341485 TCHHQ07283 1943 aa17.95■□□□□ 0.46
TPM3-208ENST00000341485 SCN7AQ01118 1682 aa17.95■□□□□ 0.46
TPM3-208ENST00000341485 EYA2O00167 538 aa17.95■□□□□ 0.46
TPM3-208ENST00000341485 SLC27A2O14975 620 aa17.95■□□□□ 0.46
TPM3-208ENST00000341485 FOXD4L6Q3SYB3 417 aaPredicted RBP17.95■□□□□ 0.46
TPM3-208ENST00000341485 FOXD4L3Q6VB84 417 aaPredicted RBP17.95■□□□□ 0.46
TPM3-208ENST00000341485 TTLL11Q8NHH1 800 aa17.95■□□□□ 0.46
TPM3-208ENST00000341485 EDC3Q96F86 508 aaKnown RBP17.95■□□□□ 0.46
TPM3-208ENST00000341485 NARFQ9UHQ1 456 aa17.95■□□□□ 0.46
TPM3-208ENST00000341485 CIAO1O76071 339 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 ZKSCAN1P17029 563 aaPredicted RBP17.94■□□□□ 0.46
TPM3-208ENST00000341485 ATP5JP18859 108 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 KCNJ4P48050 445 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 CCDC173Q0VFZ6 552 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 USPL1Q5W0Q7 1092 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 PPP1R9BQ96SB3 815 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 SMC3Q9UQE7 1217 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 ANKRD18BA2A2Z9 1011 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 RGL2O15211 777 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 HSP90B1P14625 803 aaKnown RBP17.94■□□□□ 0.46
TPM3-208ENST00000341485 SLC27A3Q5K4L6 730 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 ATG9AQ7Z3C6 839 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 CCDC83Q8IWF9 413 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 FBXO41Q8TF61 875 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 GDPD2Q9HCC8 539 aa17.94■□□□□ 0.46
TPM3-208ENST00000341485 PHF14O94880 888 aa17.93■□□□□ 0.46
TPM3-208ENST00000341485 NTSR2O95665 410 aa17.93■□□□□ 0.46
TPM3-208ENST00000341485 ZSCAN22P10073 491 aaPredicted RBP17.93■□□□□ 0.46
TPM3-208ENST00000341485 SYT1P21579 422 aa17.93■□□□□ 0.46
TPM3-208ENST00000341485 ITGA6P23229 1130 aa17.93■□□□□ 0.46
TPM3-208ENST00000341485 ST3GAL1Q11201 340 aa17.93■□□□□ 0.46
TPM3-208ENST00000341485 LRRC24Q50LG9 513 aa17.93■□□□□ 0.46
TPM3-208ENST00000341485 LRSAM1Q6UWE0 723 aa17.93■□□□□ 0.46
TPM3-208ENST00000341485 BICDL1Q6ZP65 573 aa17.93■□□□□ 0.46
TPM3-208ENST00000341485 ZNF589Q86UQ0 364 aaPredicted RBP17.93■□□□□ 0.46
TPM3-208ENST00000341485 ZSCAN31Q96LW9 406 aaPredicted RBP17.93■□□□□ 0.46
TPM3-208ENST00000341485 GREM2Q9H772 168 aa17.93■□□□□ 0.46
TPM3-208ENST00000341485 LRRC4BQ9NT99 713 aa17.93■□□□□ 0.46
TPM3-208ENST00000341485 SRP68Q9UHB9 627 aaKnown RBP17.93■□□□□ 0.46
TPM3-208ENST00000341485 FBXO3Q9UK99 471 aa17.93■□□□□ 0.46
TPM3-208ENST00000341485 SYCE3A1L190 88 aa17.92■□□□□ 0.46
TPM3-208ENST00000341485 STX6O43752 255 aa17.92■□□□□ 0.46
TPM3-208ENST00000341485 HCLS1P14317 486 aaPredicted RBP17.92■□□□□ 0.46
TPM3-208ENST00000341485 COL9A3Q14050 684 aaPredicted RBP17.92■□□□□ 0.46
TPM3-208ENST00000341485 USP48Q86UV5 1035 aa17.92■□□□□ 0.46
TPM3-208ENST00000341485 ARHGEF1Q92888 912 aaKnown RBP17.92■□□□□ 0.46
TPM3-208ENST00000341485 SH2B1Q9NRF2 756 aaPredicted RBP17.92■□□□□ 0.46
TPM3-208ENST00000341485 GADD45BO75293 160 aaPredicted RBP17.92■□□□□ 0.46
TPM3-208ENST00000341485 TRAPPC3LQ5T215 181 aa17.92■□□□□ 0.46
TPM3-208ENST00000341485 TRIM44Q96DX7 344 aaPredicted RBP17.92■□□□□ 0.46
TPM3-208ENST00000341485 DBNDD2Q9BQY9 259 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms