RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 SEC24BO95487 1268 aa21.17■□□□□ 0.98
CLDN4-201ENST00000340958 MAP4K4O95819 1239 aaPredicted RBP21.17■□□□□ 0.98
CLDN4-201ENST00000340958 ANP32AP39687 249 aaKnown RBP21.17■□□□□ 0.98
CLDN4-201ENST00000340958 TBC1D9Q6ZT07 1266 aa21.17■□□□□ 0.98
CLDN4-201ENST00000340958 CCDC24Q8N4L8 307 aa21.17■□□□□ 0.98
CLDN4-201ENST00000340958 CNBD1Q8NA66 436 aa21.17■□□□□ 0.98
CLDN4-201ENST00000340958 SYT17Q9BSW7 474 aa21.17■□□□□ 0.98
CLDN4-201ENST00000340958 TLR7Q9NYK1 1049 aaKnown RBP21.17■□□□□ 0.98
CLDN4-201ENST00000340958 GOLGB1Q14789 3259 aaKnown RBP21.17■□□□□ 0.98
CLDN4-201ENST00000340958 EIF5BO60841 1220 aaKnown RBP21.16■□□□□ 0.98
CLDN4-201ENST00000340958 SLC10A5Q5PT55 438 aa21.16■□□□□ 0.98
CLDN4-201ENST00000340958 PI4K2BQ8TCG2 481 aa21.16■□□□□ 0.98
CLDN4-201ENST00000340958 CDC5LQ99459 802 aaKnown RBP21.16■□□□□ 0.98
CLDN4-201ENST00000340958 SEC31BQ9NQW1 1179 aa21.16■□□□□ 0.98
CLDN4-201ENST00000340958 CNTROBQ8N137 903 aa21.15■□□□□ 0.98
CLDN4-201ENST00000340958 GPR108Q9NPR9 543 aa21.15■□□□□ 0.98
CLDN4-201ENST00000340958 ABCC12Q96J65 1359 aa21.14■□□□□ 0.98
CLDN4-201ENST00000340958 TIMM10P62072 90 aa21.14■□□□□ 0.97
CLDN4-201ENST00000340958 GORABQ5T7V8 394 aa21.14■□□□□ 0.97
CLDN4-201ENST00000340958 ST5P78524 1137 aa21.13■□□□□ 0.97
CLDN4-201ENST00000340958 DDR1Q08345 913 aa21.13■□□□□ 0.97
CLDN4-201ENST00000340958 SF3B3Q15393 1217 aaKnown RBP21.13■□□□□ 0.97
CLDN4-201ENST00000340958 DBNDD2Q9BQY9 259 aa21.13■□□□□ 0.97
CLDN4-201ENST00000340958 DBNLQ9UJU6 430 aaKnown RBP21.13■□□□□ 0.97
CLDN4-201ENST00000340958 RIPOR2Q9Y4F9 1068 aa21.13■□□□□ 0.97
CLDN4-201ENST00000340958 DDX60Q8IY21 1712 aaKnown RBP21.13■□□□□ 0.97
CLDN4-201ENST00000340958 KIF13BQ9NQT8 1826 aa21.13■□□□□ 0.97
CLDN4-201ENST00000340958 A0A1B0GUL7 405 aa21.13■□□□□ 0.97
CLDN4-201ENST00000340958 SERPINB2P05120 415 aa21.13■□□□□ 0.97
CLDN4-201ENST00000340958 ANKRD18AQ8IVF6 992 aa21.13■□□□□ 0.97
CLDN4-201ENST00000340958 BOLA2Q9H3K6 86 aa21.13■□□□□ 0.97
CLDN4-201ENST00000340958 UTRNP46939 3433 aa21.13■□□□□ 0.97
CLDN4-201ENST00000340958 RTL9Q8NET4 1388 aa21.13■□□□□ 0.97
CLDN4-201ENST00000340958 MROH5Q6ZUA9 1318 aa21.12■□□□□ 0.97
CLDN4-201ENST00000340958 TM4SF1P30408 202 aa21.12■□□□□ 0.97
CLDN4-201ENST00000340958 C3orf67Q6ZVT6 689 aa21.12■□□□□ 0.97
CLDN4-201ENST00000340958 NLGN2Q8NFZ4 835 aa21.11■□□□□ 0.97
CLDN4-201ENST00000340958 PARP3Q9Y6F1 533 aa21.11■□□□□ 0.97
CLDN4-201ENST00000340958 LAMB2P55268 1798 aa21.11■□□□□ 0.97
CLDN4-201ENST00000340958 ATP2B3Q16720 1220 aa21.11■□□□□ 0.97
CLDN4-201ENST00000340958 POLRMTO00411 1230 aaKnown RBP21.1■□□□□ 0.97
CLDN4-201ENST00000340958 DDX46Q7L014 1031 aaKnown RBP21.1■□□□□ 0.97
CLDN4-201ENST00000340958 ZNF609O15014 1411 aa21.1■□□□□ 0.97
CLDN4-201ENST00000340958 NRXN2Q9P2S2 1712 aa21.09■□□□□ 0.97
CLDN4-201ENST00000340958 CCDC158Q5M9N0 1113 aa21.09■□□□□ 0.97
CLDN4-201ENST00000340958 PRR5LQ6MZQ0 368 aa21.09■□□□□ 0.97
CLDN4-201ENST00000340958 PDE8BO95263 885 aa21.08■□□□□ 0.97
CLDN4-201ENST00000340958 ATP5JP18859 108 aa21.08■□□□□ 0.97
CLDN4-201ENST00000340958 HELBQ8NG08 1087 aaPredicted RBP21.08■□□□□ 0.97
CLDN4-201ENST00000340958 EVI5LQ96CN4 794 aa21.08■□□□□ 0.97
CLDN4-201ENST00000340958 CD2APQ9Y5K6 639 aa21.08■□□□□ 0.97
CLDN4-201ENST00000340958 C10orf71Q711Q0 1435 aa21.08■□□□□ 0.97
CLDN4-201ENST00000340958 KIAA1551Q9HCM1 1747 aa21.08■□□□□ 0.96
CLDN4-201ENST00000340958 XAGE2Q96GT9 111 aa21.08■□□□□ 0.96
CLDN4-201ENST00000340958 PUM3Q15397 648 aaKnown RBP21.07■□□□□ 0.96
CLDN4-201ENST00000340958 TTC39AQ5SRH9 613 aa21.07■□□□□ 0.96
CLDN4-201ENST00000340958 DNAJC2Q99543 621 aaKnown RBP21.07■□□□□ 0.96
CLDN4-201ENST00000340958 RIC1Q4ADV7 1423 aa21.07■□□□□ 0.96
CLDN4-201ENST00000340958 RPGRQ92834 1020 aaKnown RBP21.06■□□□□ 0.96
CLDN4-201ENST00000340958 C22orf23Q9BZE7 217 aa21.06■□□□□ 0.96
CLDN4-201ENST00000340958 CHMLP26374 656 aa21.06■□□□□ 0.96
CLDN4-201ENST00000340958 TAF5LO75529 589 aa21.05■□□□□ 0.96
CLDN4-201ENST00000340958 REC8O95072 547 aa21.05■□□□□ 0.96
CLDN4-201ENST00000340958 SLC5A1P13866 664 aa21.05■□□□□ 0.96
CLDN4-201ENST00000340958 ADORA1P30542 326 aa21.05■□□□□ 0.96
CLDN4-201ENST00000340958 RPS8P62241 208 aaKnown RBP21.05■□□□□ 0.96
CLDN4-201ENST00000340958 CHRNDQ07001 517 aa21.05■□□□□ 0.96
CLDN4-201ENST00000340958 CELF1Q92879 486 aaKnown RBP21.05■□□□□ 0.96
CLDN4-201ENST00000340958 FSD1Q9BTV5 496 aa21.05■□□□□ 0.96
CLDN4-201ENST00000340958 DIAPH3Q9NSV4 1193 aa21.05■□□□□ 0.96
CLDN4-201ENST00000340958 BSDC1Q9NW68 430 aaPredicted RBP21.05■□□□□ 0.96
CLDN4-201ENST00000340958 IFIT1P09914 478 aaKnown RBP21.04■□□□□ 0.96
CLDN4-201ENST00000340958 VGLL2Q8N8G2 317 aa21.04■□□□□ 0.96
CLDN4-201ENST00000340958 LPIN2Q92539 896 aa21.04■□□□□ 0.96
CLDN4-201ENST00000340958 TBC1D32Q96NH3 1257 aa21.03■□□□□ 0.96
CLDN4-201ENST00000340958 HAUS7Q99871 368 aa21.03■□□□□ 0.96
CLDN4-201ENST00000340958 HIP1O00291 1037 aa21.02■□□□□ 0.96
CLDN4-201ENST00000340958 RUFY2Q8WXA3 655 aa21.01■□□□□ 0.95
CLDN4-201ENST00000340958 ESYT1Q9BSJ8 1104 aa21.01■□□□□ 0.95
CLDN4-201ENST00000340958 NDUFB9Q9Y6M9 179 aa21.01■□□□□ 0.95
CLDN4-201ENST00000340958 ANKRD31Q8N7Z5 1873 aa21.01■□□□□ 0.95
CLDN4-201ENST00000340958 KCNJ4P48050 445 aa21.01■□□□□ 0.95
CLDN4-201ENST00000340958 FKBP4Q02790 459 aaKnown RBP eCLIP21.01■□□□□ 0.95
CLDN4-201ENST00000340958 RBM17Q96I25 401 aaKnown RBP21.01■□□□□ 0.95
CLDN4-201ENST00000340958 BRCA1P38398 1863 aaKnown RBP21■□□□□ 0.95
CLDN4-201ENST00000340958 SPEF2Q9C093 1822 aa21■□□□□ 0.95
CLDN4-201ENST00000340958 CWC27Q6UX04 472 aaKnown RBP21■□□□□ 0.95
CLDN4-201ENST00000340958 DDRGK1Q96HY6 314 aa21■□□□□ 0.95
CLDN4-201ENST00000340958 MINPP1Q9UNW1 487 aa21■□□□□ 0.95
CLDN4-201ENST00000340958 AK9Q5TCS8 1911 aa20.99■□□□□ 0.95
CLDN4-201ENST00000340958 GOLIM4O00461 696 aa20.99■□□□□ 0.95
CLDN4-201ENST00000340958 GRAPQ13588 217 aa20.99■□□□□ 0.95
CLDN4-201ENST00000340958 GRAPLQ8TC17 118 aaPredicted RBP20.99■□□□□ 0.95
CLDN4-201ENST00000340958 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.99■□□□□ 0.95
CLDN4-201ENST00000340958 EDC3Q96F86 508 aaKnown RBP20.99■□□□□ 0.95
CLDN4-201ENST00000340958 PAG1Q9NWQ8 432 aa20.99■□□□□ 0.95
CLDN4-201ENST00000340958 ANKRD2Q9GZV1 360 aa20.99■□□□□ 0.95
CLDN4-201ENST00000340958 ANO2Q9NQ90 1003 aa20.99■□□□□ 0.95
CLDN4-201ENST00000340958 WWC3Q9ULE0 1092 aa20.99■□□□□ 0.95
CLDN4-201ENST00000340958 FGFR2P21802 821 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms