RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MTUS1Q9ULD2 1270 aa16.17■□□□□ 0.18
COL7A1-201ENST00000328333 MPHOSPH6Q99547 160 aaKnown RBP16.17■□□□□ 0.18
COL7A1-201ENST00000328333 MRPS27Q92552 414 aaKnown RBP16.17■□□□□ 0.18
COL7A1-201ENST00000328333 ZEB2O60315 1214 aa16.17■□□□□ 0.18
COL7A1-201ENST00000328333 DNA2P51530 1060 aa16.17■□□□□ 0.18
COL7A1-201ENST00000328333 CALCOCO2Q13137 446 aa16.17■□□□□ 0.18
COL7A1-201ENST00000328333 SYNCQ9H7C4 482 aa16.17■□□□□ 0.18
COL7A1-201ENST00000328333 NSD3Q9BZ95 1437 aa16.17■□□□□ 0.18
COL7A1-201ENST00000328333 UBA5Q9GZZ9 404 aa16.16■□□□□ 0.18
COL7A1-201ENST00000328333 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.16■□□□□ 0.18
COL7A1-201ENST00000328333 THEGQ9P2T0 379 aa16.16■□□□□ 0.18
COL7A1-201ENST00000328333 KDM4AO75164 1064 aa16.16■□□□□ 0.18
COL7A1-201ENST00000328333 XRCC6P12956 609 aaKnown RBP eCLIP16.16■□□□□ 0.18
COL7A1-201ENST00000328333 CAVIN4Q5BKX8 364 aa16.16■□□□□ 0.18
COL7A1-201ENST00000328333 RAB3IPQ96QF0 476 aaPredicted RBP16.16■□□□□ 0.18
COL7A1-201ENST00000328333 PDE4BQ07343 736 aa16.16■□□□□ 0.18
COL7A1-201ENST00000328333 TBC1D9Q6ZT07 1266 aa16.16■□□□□ 0.18
COL7A1-201ENST00000328333 INTS4Q96HW7 963 aaKnown RBP16.16■□□□□ 0.18
COL7A1-201ENST00000328333 JPH4Q96JJ6 628 aa16.16■□□□□ 0.18
COL7A1-201ENST00000328333 RTL1A6NKG5 1358 aa16.16■□□□□ 0.18
COL7A1-201ENST00000328333 IL16Q14005 1332 aa16.16■□□□□ 0.18
COL7A1-201ENST00000328333 BTBD11A6QL63 1104 aa16.16■□□□□ 0.18
COL7A1-201ENST00000328333 ZNF213O14771 459 aa16.16■□□□□ 0.18
COL7A1-201ENST00000328333 NDUFAB1O14561 156 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 SYCP3Q8IZU3 236 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 STAT6P42226 847 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 RBBP5Q15291 538 aaKnown RBP16.15■□□□□ 0.18
COL7A1-201ENST00000328333 CCDC42Q96M95 316 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 GOLGA6CA6NDK9 693 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 GOLGA6DP0CG33 693 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 GOLGA6AQ9NYA3 693 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 IDH1O75874 414 aaKnown RBP16.15■□□□□ 0.18
COL7A1-201ENST00000328333 CABP2Q9NPB3 220 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 KRT13P13646 458 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 IFT20Q8IY31 132 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 CNNM2Q9H8M5 875 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 HDAC1Q13547 482 aaPredicted RBP16.15■□□□□ 0.18
COL7A1-201ENST00000328333 TCERG1LQ5VWI1 586 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 KRBA2Q6ZNG9 492 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 MCUR1Q96AQ8 359 aa16.15■□□□□ 0.18
COL7A1-201ENST00000328333 GNAT3A8MTJ3 354 aa16.14■□□□□ 0.17
COL7A1-201ENST00000328333 SNX16P57768 344 aa16.14■□□□□ 0.17
COL7A1-201ENST00000328333 MTMR3Q13615 1198 aa16.14■□□□□ 0.17
COL7A1-201ENST00000328333 IARSP41252 1262 aaKnown RBP16.14■□□□□ 0.17
COL7A1-201ENST00000328333 IMPACTQ9P2X3 320 aa16.14■□□□□ 0.17
COL7A1-201ENST00000328333 ZFP91Q96JP5 570 aaPredicted RBP16.14■□□□□ 0.17
COL7A1-201ENST00000328333 Q9H521 79 aa16.14■□□□□ 0.17
COL7A1-201ENST00000328333 TSKSQ9UJT2 592 aa16.14■□□□□ 0.17
COL7A1-201ENST00000328333 ASXL1Q8IXJ9 1541 aa16.14■□□□□ 0.17
COL7A1-201ENST00000328333 CABP4P57796 275 aa16.13■□□□□ 0.17
COL7A1-201ENST00000328333 BRAPQ7Z569 592 aa16.13■□□□□ 0.17
COL7A1-201ENST00000328333 ZNF530Q6P9A1 599 aaPredicted RBP16.13■□□□□ 0.17
COL7A1-201ENST00000328333 RARSP54136 660 aaKnown RBP16.13■□□□□ 0.17
COL7A1-201ENST00000328333 CHMP4BP1P59074 171 aa16.13■□□□□ 0.17
COL7A1-201ENST00000328333 PPP2R5EQ16537 467 aa16.13■□□□□ 0.17
COL7A1-201ENST00000328333 DNAJC8O75937 253 aaPredicted RBP16.13■□□□□ 0.17
COL7A1-201ENST00000328333 TYRO3Q06418 890 aa16.13■□□□□ 0.17
COL7A1-201ENST00000328333 CEP85LQ5SZL2 805 aa16.13■□□□□ 0.17
COL7A1-201ENST00000328333 GAS8O95995 478 aa16.13■□□□□ 0.17
COL7A1-201ENST00000328333 METAP2P50579 478 aaKnown RBP eCLIP16.13■□□□□ 0.17
COL7A1-201ENST00000328333 GSTA5Q7RTV2 222 aa16.13■□□□□ 0.17
COL7A1-201ENST00000328333 VWA3BQ502W6 1294 aa16.13■□□□□ 0.17
COL7A1-201ENST00000328333 UTP11Q9Y3A2 253 aaKnown RBP16.13■□□□□ 0.17
COL7A1-201ENST00000328333 TTF2Q9UNY4 1162 aaKnown RBP16.12■□□□□ 0.17
COL7A1-201ENST00000328333 RNF10Q8N5U6 811 aaKnown RBP16.12■□□□□ 0.17
COL7A1-201ENST00000328333 IMPG2Q9BZV3 1241 aa16.12■□□□□ 0.17
COL7A1-201ENST00000328333 NUTM2AQ8IVF1 878 aaPredicted RBP16.12■□□□□ 0.17
COL7A1-201ENST00000328333 MKNK2Q9HBH9 465 aa16.12■□□□□ 0.17
COL7A1-201ENST00000328333 KDM5AP29375 1690 aaKnown RBP16.12■□□□□ 0.17
COL7A1-201ENST00000328333 IFIT1P09914 478 aaKnown RBP16.12■□□□□ 0.17
COL7A1-201ENST00000328333 TMPOP42166 694 aaKnown RBP16.12■□□□□ 0.17
COL7A1-201ENST00000328333 USP5P45974 858 aa16.12■□□□□ 0.17
COL7A1-201ENST00000328333 TTC22Q5TAA0 569 aa16.12■□□□□ 0.17
COL7A1-201ENST00000328333 DUSP27Q5VZP5 1158 aa16.12■□□□□ 0.17
COL7A1-201ENST00000328333 NCOA7Q8NI08 942 aa16.12■□□□□ 0.17
COL7A1-201ENST00000328333 SEC62Q99442 399 aaKnown RBP16.12■□□□□ 0.17
COL7A1-201ENST00000328333 KRT23Q9C075 422 aa16.12■□□□□ 0.17
COL7A1-201ENST00000328333 LARSQ9P2J5 1176 aaKnown RBP16.12■□□□□ 0.17
COL7A1-201ENST00000328333 STARD3NLO95772 234 aa16.12■□□□□ 0.17
COL7A1-201ENST00000328333 PPP2R3AQ06190 1150 aa16.12■□□□□ 0.17
COL7A1-201ENST00000328333 MYRIPQ8NFW9 859 aa16.12■□□□□ 0.17
COL7A1-201ENST00000328333 PUS7Q96PZ0 661 aaKnown RBP16.12■□□□□ 0.17
COL7A1-201ENST00000328333 FAN1Q9Y2M0 1017 aa16.12■□□□□ 0.17
COL7A1-201ENST00000328333 RTEL1-TNFRSF6BF6WH68 1400 aa16.12■□□□□ 0.17
COL7A1-201ENST00000328333 THOC2Q8NI27 1593 aaKnown RBP16.11■□□□□ 0.17
COL7A1-201ENST00000328333 SULT6B1Q6IMI4 303 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 CETN3O15182 167 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 PCF11O94913 1555 aaKnown RBP16.11■□□□□ 0.17
COL7A1-201ENST00000328333 CPLX3Q8WVH0 158 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 SELENOSQ9BQE4 189 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 AMOTQ4VCS5 1084 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 MRVI1Q9Y6F6 885 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 GOLGA8AA7E2F4 631 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 ATP2C2O75185 946 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 SLC5A1P13866 664 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 ATP6V1AP38606 617 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 ZSWIM4Q9H7M6 989 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 SLC52A1Q9NWF4 448 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 INF2Q27J81 1249 aa16.11■□□□□ 0.17
COL7A1-201ENST00000328333 AP1ARQ63HQ0 302 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms