RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 SCARF1Q14162 830 aa22.32■■□□□ 1.16
USP39-201ENST00000323701 SLFNL1Q499Z3 407 aa22.32■■□□□ 1.16
USP39-201ENST00000323701 CCDC152Q4G0S7 254 aa22.32■■□□□ 1.16
USP39-201ENST00000323701 UBR3Q6ZT12 1888 aa22.32■■□□□ 1.16
USP39-201ENST00000323701 ATP2B3Q16720 1220 aa22.32■■□□□ 1.16
USP39-201ENST00000323701 SLKQ9H2G2 1235 aaPredicted RBP22.32■■□□□ 1.16
USP39-201ENST00000323701 AKAP2Q9Y2D5 859 aa22.32■■□□□ 1.16
USP39-201ENST00000323701 PDE8BO95263 885 aa22.31■■□□□ 1.16
USP39-201ENST00000323701 TXNRD1Q16881 649 aa22.31■■□□□ 1.16
USP39-201ENST00000323701 ANTXR1Q9H6X2 564 aa22.31■■□□□ 1.16
USP39-201ENST00000323701 COL24A1Q17RW2 1714 aa22.31■■□□□ 1.16
USP39-201ENST00000323701 CASZ1Q86V15 1759 aa22.31■■□□□ 1.16
USP39-201ENST00000323701 SPEF2Q9C093 1822 aa22.31■■□□□ 1.16
USP39-201ENST00000323701 GOLIM4O00461 696 aa22.31■■□□□ 1.16
USP39-201ENST00000323701 TAF5LO75529 589 aa22.31■■□□□ 1.16
USP39-201ENST00000323701 RXRBP28702 533 aa22.31■■□□□ 1.16
USP39-201ENST00000323701 NBR1Q14596 966 aa22.31■■□□□ 1.16
USP39-201ENST00000323701 SLC27A3Q5K4L6 730 aa22.31■■□□□ 1.16
USP39-201ENST00000323701 RAD50Q92878 1312 aa22.3■■□□□ 1.16
USP39-201ENST00000323701 POTEAQ6S8J7 498 aa22.3■■□□□ 1.16
USP39-201ENST00000323701 PI16Q6UXB8 463 aa22.3■■□□□ 1.16
USP39-201ENST00000323701 NBPF5PQ86XG9 351 aaPredicted RBP22.3■■□□□ 1.16
USP39-201ENST00000323701 SNRKQ9NRH2 765 aa22.3■■□□□ 1.16
USP39-201ENST00000323701 RTL9Q8NET4 1388 aa22.3■■□□□ 1.16
USP39-201ENST00000323701 IFIT1P09914 478 aaKnown RBP22.29■■□□□ 1.16
USP39-201ENST00000323701 RABEP1Q15276 862 aa22.29■■□□□ 1.16
USP39-201ENST00000323701 ZNF589Q86UQ0 364 aaPredicted RBP22.29■■□□□ 1.16
USP39-201ENST00000323701 HSCBQ8IWL3 235 aa22.29■■□□□ 1.16
USP39-201ENST00000323701 SLC10A5Q5PT55 438 aa22.29■■□□□ 1.16
USP39-201ENST00000323701 PAG1Q9NWQ8 432 aa22.29■■□□□ 1.16
USP39-201ENST00000323701 GTF2E1P29083 439 aaPredicted RBP22.28■■□□□ 1.16
USP39-201ENST00000323701 HSPA4P34932 840 aa22.28■■□□□ 1.16
USP39-201ENST00000323701 NFIXQ14938 502 aa22.28■■□□□ 1.16
USP39-201ENST00000323701 SEC62Q99442 399 aaKnown RBP22.28■■□□□ 1.16
USP39-201ENST00000323701 MPHOSPH8Q99549 860 aa22.28■■□□□ 1.16
USP39-201ENST00000323701 WTIPA6NIX2 430 aaPredicted RBP22.28■■□□□ 1.16
USP39-201ENST00000323701 SF3B3Q15393 1217 aaKnown RBP22.28■■□□□ 1.16
USP39-201ENST00000323701 GORABQ5T7V8 394 aa22.28■■□□□ 1.16
USP39-201ENST00000323701 RUFY2Q8WXA3 655 aa22.28■■□□□ 1.16
USP39-201ENST00000323701 FGFR2P21802 821 aa22.27■■□□□ 1.16
USP39-201ENST00000323701 RASEFQ8IZ41 740 aa22.27■■□□□ 1.16
USP39-201ENST00000323701 KBTBD3Q8NAB2 608 aa22.27■■□□□ 1.16
USP39-201ENST00000323701 TTC39AQ5SRH9 613 aa22.26■■□□□ 1.15
USP39-201ENST00000323701 MED23Q9ULK4 1368 aa22.26■■□□□ 1.15
USP39-201ENST00000323701 MROH5Q6ZUA9 1318 aa22.26■■□□□ 1.15
USP39-201ENST00000323701 FKBP4Q02790 459 aaKnown RBP eCLIP22.26■■□□□ 1.15
USP39-201ENST00000323701 CCDC158Q5M9N0 1113 aa22.26■■□□□ 1.15
USP39-201ENST00000323701 HIP1O00291 1037 aa22.25■■□□□ 1.15
USP39-201ENST00000323701 APBA3O96018 575 aa22.25■■□□□ 1.15
USP39-201ENST00000323701 GYS1P13807 737 aa22.25■■□□□ 1.15
USP39-201ENST00000323701 HSP90B1P14625 803 aaKnown RBP22.25■■□□□ 1.15
USP39-201ENST00000323701 CELF1Q92879 486 aaKnown RBP22.25■■□□□ 1.15
USP39-201ENST00000323701 NYXQ9GZU5 481 aa22.25■■□□□ 1.15
USP39-201ENST00000323701 ADRA2BP18089 450 aa22.25■■□□□ 1.15
USP39-201ENST00000323701 MCAMP43121 646 aa22.25■■□□□ 1.15
USP39-201ENST00000323701 TPTE2Q6XPS3 522 aa22.25■■□□□ 1.15
USP39-201ENST00000323701 CCDC129Q6ZRS4 1044 aa22.25■■□□□ 1.15
USP39-201ENST00000323701 KIAA1211Q6ZU35 1233 aa22.25■■□□□ 1.15
USP39-201ENST00000323701 CCDC171Q6TFL3 1326 aa22.24■■□□□ 1.15
USP39-201ENST00000323701 IGHMBP2P38935 993 aaKnown RBP22.24■■□□□ 1.15
USP39-201ENST00000323701 PHKA1P46020 1223 aa22.24■■□□□ 1.15
USP39-201ENST00000323701 PUM3Q15397 648 aaKnown RBP22.24■■□□□ 1.15
USP39-201ENST00000323701 ZNF827Q17R98 1081 aa22.24■■□□□ 1.15
USP39-201ENST00000323701 ZAP70P43403 619 aa22.23■■□□□ 1.15
USP39-201ENST00000323701 CHRNDQ07001 517 aa22.23■■□□□ 1.15
USP39-201ENST00000323701 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.23■■□□□ 1.15
USP39-201ENST00000323701 IL17RAQ96F46 866 aa22.23■■□□□ 1.15
USP39-201ENST00000323701 SNX14Q9Y5W7 946 aa22.23■■□□□ 1.15
USP39-201ENST00000323701 K7ELQ4 463 aaPredicted RBP22.23■■□□□ 1.15
USP39-201ENST00000323701 EPB41L2O43491 1005 aaKnown RBP22.23■■□□□ 1.15
USP39-201ENST00000323701 AKAP11Q9UKA4 1901 aa22.23■■□□□ 1.15
USP39-201ENST00000323701 TNRC6CQ9HCJ0 1690 aaKnown RBP22.23■■□□□ 1.15
USP39-201ENST00000323701 MCCP23508 829 aa22.22■■□□□ 1.15
USP39-201ENST00000323701 ANAPC15P60006 121 aa22.22■■□□□ 1.15
USP39-201ENST00000323701 CCDC102BQ68D86 513 aa22.22■■□□□ 1.15
USP39-201ENST00000323701 SLC51AQ86UW1 340 aa22.22■■□□□ 1.15
USP39-201ENST00000323701 LPIN2Q92539 896 aa22.22■■□□□ 1.15
USP39-201ENST00000323701 UPF3BQ9BZI7 483 aaKnown RBP22.22■■□□□ 1.15
USP39-201ENST00000323701 PLSCR1O15162 318 aa22.22■■□□□ 1.15
USP39-201ENST00000323701 SSFA2P28290 1259 aa22.22■■□□□ 1.15
USP39-201ENST00000323701 NEK4P51957 841 aa22.22■■□□□ 1.15
USP39-201ENST00000323701 TM4SF1P30408 202 aa22.21■■□□□ 1.15
USP39-201ENST00000323701 MAP4K1Q92918 833 aa22.21■■□□□ 1.15
USP39-201ENST00000323701 NLRP3Q96P20 1036 aa22.21■■□□□ 1.15
USP39-201ENST00000323701 CDC5LQ99459 802 aaKnown RBP22.21■■□□□ 1.15
USP39-201ENST00000323701 FOXD4L1Q9NU39 408 aa22.21■■□□□ 1.15
USP39-201ENST00000323701 CARMIL3Q8ND23 1372 aa22.21■■□□□ 1.15
USP39-201ENST00000323701 COL9A3Q14050 684 aaPredicted RBP22.21■■□□□ 1.15
USP39-201ENST00000323701 PRPF40BQ6NWY9 871 aaKnown RBP22.21■■□□□ 1.15
USP39-201ENST00000323701 TAF6LQ9Y6J9 622 aa22.21■■□□□ 1.15
USP39-201ENST00000323701 RFX7Q2KHR2 1363 aa22.21■■□□□ 1.15
USP39-201ENST00000323701 NECTIN1Q15223 517 aa22.2■■□□□ 1.14
USP39-201ENST00000323701 ANKRD18AQ8IVF6 992 aa22.2■■□□□ 1.14
USP39-201ENST00000323701 RBM8AQ9Y5S9 174 aaKnown RBP22.2■■□□□ 1.14
USP39-201ENST00000323701 BSDC1Q9NW68 430 aaPredicted RBP22.19■■□□□ 1.14
USP39-201ENST00000323701 ARAP2Q8WZ64 1704 aa22.18■■□□□ 1.14
USP39-201ENST00000323701 CYP2E1P05181 493 aaPredicted RBP22.18■■□□□ 1.14
USP39-201ENST00000323701 ADCK5Q3MIX3 580 aa22.18■■□□□ 1.14
USP39-201ENST00000323701 PRR5LQ6MZQ0 368 aa22.18■■□□□ 1.14
USP39-201ENST00000323701 MINPP1Q9UNW1 487 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms