RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 ZSWIM6Q9HCJ5 1215 aa17.06■□□□□ 0.32
TCOF1-201ENST00000323668 SSRP1Q08945 709 aaKnown RBP17.06■□□□□ 0.32
TCOF1-201ENST00000323668 NOM1Q5C9Z4 860 aaKnown RBP17.06■□□□□ 0.32
TCOF1-201ENST00000323668 EIF3JO75822 258 aaKnown RBP17.06■□□□□ 0.32
TCOF1-201ENST00000323668 CHST3Q7LGC8 479 aa17.06■□□□□ 0.32
TCOF1-201ENST00000323668 UBASH3AP57075 661 aa17.05■□□□□ 0.32
TCOF1-201ENST00000323668 STIM1Q13586 685 aa17.05■□□□□ 0.32
TCOF1-201ENST00000323668 BEND3Q5T5X7 828 aa17.05■□□□□ 0.32
TCOF1-201ENST00000323668 LSG1Q9H089 658 aaKnown RBP17.05■□□□□ 0.32
TCOF1-201ENST00000323668 RIOK3O14730 519 aaKnown RBP17.05■□□□□ 0.32
TCOF1-201ENST00000323668 BMS1Q14692 1282 aaKnown RBP17.05■□□□□ 0.32
TCOF1-201ENST00000323668 CASQ1P31415 396 aa17.05■□□□□ 0.32
TCOF1-201ENST00000323668 NBPF6Q5VWK0 638 aa17.05■□□□□ 0.32
TCOF1-201ENST00000323668 NBPF4Q96M43 638 aa17.05■□□□□ 0.32
TCOF1-201ENST00000323668 TMEM2Q9UHN6 1383 aa17.05■□□□□ 0.32
TCOF1-201ENST00000323668 KRT222Q8N1A0 295 aa17.05■□□□□ 0.32
TCOF1-201ENST00000323668 TMX4Q9H1E5 349 aaPredicted RBP17.05■□□□□ 0.32
TCOF1-201ENST00000323668 TMOD3Q9NYL9 352 aa17.05■□□□□ 0.32
TCOF1-201ENST00000323668 SETBP1Q9Y6X0 1596 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 TMEM67Q5HYA8 995 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 NSFL1CQ9UNZ2 370 aaKnown RBP17.04■□□□□ 0.32
TCOF1-201ENST00000323668 ANKRD18BA2A2Z9 1011 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 SLU7O95391 586 aaKnown RBP17.04■□□□□ 0.32
TCOF1-201ENST00000323668 ZNF75DP51815 510 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 FAM160A1Q05DH4 1040 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 TTF1Q15361 905 aaPredicted RBP17.04■□□□□ 0.32
TCOF1-201ENST00000323668 CCDC144CPQ8IYA2 1237 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 RAI14Q9P0K7 980 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 ABCF2Q9UG63 623 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 CHD1O14646 1710 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 TNNI3KQ59H18 835 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 LLPHQ9BRT6 129 aaKnown RBP17.04■□□□□ 0.32
TCOF1-201ENST00000323668 ALG1Q9BT22 464 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 FPGT-TNNI3KV9GXZ4 949 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 PRC1O43663 620 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 LMOD1P29536 600 aaPredicted RBP17.04■□□□□ 0.32
TCOF1-201ENST00000323668 CCDC129Q6ZRS4 1044 aa17.04■□□□□ 0.32
TCOF1-201ENST00000323668 G3V3G9 751 aa17.03■□□□□ 0.32
TCOF1-201ENST00000323668 RNF113AO15541 343 aaKnown RBP17.03■□□□□ 0.32
TCOF1-201ENST00000323668 DCAF8Q5TAQ9 597 aa17.03■□□□□ 0.32
TCOF1-201ENST00000323668 DBNDD2Q9BQY9 259 aa17.03■□□□□ 0.32
TCOF1-201ENST00000323668 GOLGA6L9A6NEM1 432 aa17.03■□□□□ 0.32
TCOF1-201ENST00000323668 MINDY4BA8MYZ0 360 aa17.03■□□□□ 0.32
TCOF1-201ENST00000323668 KIF5CO60282 957 aa17.03■□□□□ 0.32
TCOF1-201ENST00000323668 MARCKSP29966 332 aaPredicted RBP17.03■□□□□ 0.32
TCOF1-201ENST00000323668 ZNF790Q6PG37 636 aa17.03■□□□□ 0.32
TCOF1-201ENST00000323668 EAF2Q96CJ1 260 aaPredicted RBP17.03■□□□□ 0.32
TCOF1-201ENST00000323668 IGSF1Q8N6C5 1336 aa17.03■□□□□ 0.32
TCOF1-201ENST00000323668 CHRNA2Q15822 529 aa17.03■□□□□ 0.32
TCOF1-201ENST00000323668 SMAP1Q8IYB5 467 aaPredicted RBP17.03■□□□□ 0.32
TCOF1-201ENST00000323668 FEZ1Q99689 392 aa17.03■□□□□ 0.32
TCOF1-201ENST00000323668 METTL22Q9BUU2 404 aaPredicted RBP17.03■□□□□ 0.32
TCOF1-201ENST00000323668 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.03■□□□□ 0.32
TCOF1-201ENST00000323668 V9GYY5 206 aaPredicted RBP17.03■□□□□ 0.32
TCOF1-201ENST00000323668 PRR36Q9H6K5 1346 aa17.02■□□□□ 0.32
TCOF1-201ENST00000323668 GLI2P10070 1586 aa17.02■□□□□ 0.32
TCOF1-201ENST00000323668 ARHGAP31Q2M1Z3 1444 aa17.02■□□□□ 0.32
TCOF1-201ENST00000323668 CLSTN1O94985 981 aa17.02■□□□□ 0.32
TCOF1-201ENST00000323668 TRMT112Q9UI30 125 aaKnown RBP17.02■□□□□ 0.32
TCOF1-201ENST00000323668 TPCN1Q9ULQ1 816 aa17.02■□□□□ 0.32
TCOF1-201ENST00000323668 KCNQ3O43525 872 aa17.02■□□□□ 0.32
TCOF1-201ENST00000323668 LIG1P18858 919 aa17.02■□□□□ 0.32
TCOF1-201ENST00000323668 HSP90AB3PQ58FF7 597 aa17.02■□□□□ 0.32
TCOF1-201ENST00000323668 DNAI1Q9UI46 699 aa17.02■□□□□ 0.32
TCOF1-201ENST00000323668 IGHMBP2P38935 993 aaKnown RBP17.02■□□□□ 0.31
TCOF1-201ENST00000323668 KIF4BQ2VIQ3 1234 aa17.02■□□□□ 0.31
TCOF1-201ENST00000323668 TTC6Q86TZ1 520 aa17.02■□□□□ 0.31
TCOF1-201ENST00000323668 ADGRB3O60242 1522 aa17.02■□□□□ 0.31
TCOF1-201ENST00000323668 JAK2O60674 1132 aa17.02■□□□□ 0.31
TCOF1-201ENST00000323668 TUBB4AP04350 444 aa17.02■□□□□ 0.31
TCOF1-201ENST00000323668 GPTP24298 496 aa17.02■□□□□ 0.31
TCOF1-201ENST00000323668 HELLSQ9NRZ9 838 aa17.02■□□□□ 0.31
TCOF1-201ENST00000323668 MED14O60244 1454 aa17.01■□□□□ 0.31
TCOF1-201ENST00000323668 CFAP74Q9C0B2 1584 aa17.01■□□□□ 0.31
TCOF1-201ENST00000323668 IQSEC2Q5JU85 1478 aa17.01■□□□□ 0.31
TCOF1-201ENST00000323668 GNG11P61952 73 aa17.01■□□□□ 0.31
TCOF1-201ENST00000323668 SLC26A6Q9BXS9 759 aa17.01■□□□□ 0.31
TCOF1-201ENST00000323668 ZBTB43O43298 467 aa17.01■□□□□ 0.31
TCOF1-201ENST00000323668 LTKP29376 864 aa17.01■□□□□ 0.31
TCOF1-201ENST00000323668 GTPBP4Q9BZE4 634 aaKnown RBP17.01■□□□□ 0.31
TCOF1-201ENST00000323668 RNF41Q9H4P4 317 aaPredicted RBP17.01■□□□□ 0.31
TCOF1-201ENST00000323668 IFNKQ9P0W0 207 aa17.01■□□□□ 0.31
TCOF1-201ENST00000323668 A0A1B0GVL5 298 aa17.01■□□□□ 0.31
TCOF1-201ENST00000323668 TIMM10P62072 90 aa17.01■□□□□ 0.31
TCOF1-201ENST00000323668 ADCK5Q3MIX3 580 aa17.01■□□□□ 0.31
TCOF1-201ENST00000323668 BRAPQ7Z569 592 aa17.01■□□□□ 0.31
TCOF1-201ENST00000323668 GCKRQ14397 625 aa17■□□□□ 0.31
TCOF1-201ENST00000323668 CPLX3Q8WVH0 158 aa17■□□□□ 0.31
TCOF1-201ENST00000323668 GIGYF1O75420 1035 aaPredicted RBP17■□□□□ 0.31
TCOF1-201ENST00000323668 TSC1Q92574 1164 aa17■□□□□ 0.31
TCOF1-201ENST00000323668 ATP2B3Q16720 1220 aa17■□□□□ 0.31
TCOF1-201ENST00000323668 A0A0D9SFI3 127 aa17■□□□□ 0.31
TCOF1-201ENST00000323668 POLR3GO15318 223 aaPredicted RBP17■□□□□ 0.31
TCOF1-201ENST00000323668 KBTBD3Q8NAB2 608 aa17■□□□□ 0.31
TCOF1-201ENST00000323668 RAD21O60216 631 aa16.99■□□□□ 0.31
TCOF1-201ENST00000323668 KANK3Q6NY19 840 aa16.99■□□□□ 0.31
TCOF1-201ENST00000323668 ZDHHC9Q9Y397 364 aa16.99■□□□□ 0.31
TCOF1-201ENST00000323668 SETQ01105 290 aaPredicted RBP16.99■□□□□ 0.31
TCOF1-201ENST00000323668 ZNF397Q8NF99 534 aaPredicted RBP16.99■□□□□ 0.31
TCOF1-201ENST00000323668 HECW2Q9P2P5 1572 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms