RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 NBPF5PQ86XG9 351 aaPredicted RBP12.85□□□□□ -0.35
LSM3-201ENST00000306024 NUTM1Q86Y26 1132 aa12.85□□□□□ -0.35
LSM3-201ENST00000306024 MPHOSPH8Q99549 860 aa12.85□□□□□ -0.35
LSM3-201ENST00000306024 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.85□□□□□ -0.35
LSM3-201ENST00000306024 V9GYY5 206 aaPredicted RBP12.85□□□□□ -0.35
LSM3-201ENST00000306024 ADCY9O60503 1353 aa12.85□□□□□ -0.35
LSM3-201ENST00000306024 AACSQ86V21 672 aa12.85□□□□□ -0.35
LSM3-201ENST00000306024 ANO2Q9NQ90 1003 aa12.85□□□□□ -0.35
LSM3-201ENST00000306024 FAM208AQ9UK61 1670 aaKnown RBP12.84□□□□□ -0.35
LSM3-201ENST00000306024 RAB11FIP3O75154 756 aa12.84□□□□□ -0.35
LSM3-201ENST00000306024 UTP14AQ9BVJ6 771 aaKnown RBP12.84□□□□□ -0.35
LSM3-201ENST00000306024 CEP126Q9P2H0 1117 aa12.84□□□□□ -0.35
LSM3-201ENST00000306024 IRS4O14654 1257 aaPredicted RBP12.84□□□□□ -0.35
LSM3-201ENST00000306024 IGKV5-2P06315 115 aa12.84□□□□□ -0.35
LSM3-201ENST00000306024 ITPK1Q13572 414 aa12.84□□□□□ -0.35
LSM3-201ENST00000306024 ATP6V1DQ9Y5K8 247 aa12.84□□□□□ -0.35
LSM3-201ENST00000306024 COL18A1P39060 1754 aa12.84□□□□□ -0.35
LSM3-201ENST00000306024 GPS2Q13227 327 aa12.84□□□□□ -0.35
LSM3-201ENST00000306024 WDR33Q9C0J8 1336 aaKnown RBP12.83□□□□□ -0.36
LSM3-201ENST00000306024 MCM2P49736 904 aa12.83□□□□□ -0.36
LSM3-201ENST00000306024 PTF1AQ7RTS3 328 aa12.83□□□□□ -0.36
LSM3-201ENST00000306024 NOL10Q9BSC4 688 aaKnown RBP12.83□□□□□ -0.36
LSM3-201ENST00000306024 TMX4Q9H1E5 349 aaPredicted RBP12.83□□□□□ -0.36
LSM3-201ENST00000306024 ERC2O15083 957 aa12.83□□□□□ -0.36
LSM3-201ENST00000306024 HLFQ16534 295 aa12.83□□□□□ -0.36
LSM3-201ENST00000306024 KLHDC4Q8TBB5 520 aa12.83□□□□□ -0.36
LSM3-201ENST00000306024 RHPN1Q8TCX5 695 aa12.83□□□□□ -0.36
LSM3-201ENST00000306024 NRDCO43847 1150 aa12.82□□□□□ -0.36
LSM3-201ENST00000306024 CLEC17AQ6ZS10 378 aa12.82□□□□□ -0.36
LSM3-201ENST00000306024 SMIM5Q71RC9 77 aa12.82□□□□□ -0.36
LSM3-201ENST00000306024 GOLGA6L1Q8N7Z2 621 aa12.82□□□□□ -0.36
LSM3-201ENST00000306024 LRP6O75581 1613 aa12.82□□□□□ -0.36
LSM3-201ENST00000306024 SH3TC1Q8TE82 1336 aa12.82□□□□□ -0.36
LSM3-201ENST00000306024 ANKRD18BA2A2Z9 1011 aa12.82□□□□□ -0.36
LSM3-201ENST00000306024 CCDC192P0DO97 292 aa12.82□□□□□ -0.36
LSM3-201ENST00000306024 C16orf71Q8IYS4 520 aaPredicted RBP12.82□□□□□ -0.36
LSM3-201ENST00000306024 DISP2A7MBM2 1401 aa12.82□□□□□ -0.36
LSM3-201ENST00000306024 KDM4AO75164 1064 aa12.82□□□□□ -0.36
LSM3-201ENST00000306024 GIMAP6Q6P9H5 292 aa12.82□□□□□ -0.36
LSM3-201ENST00000306024 USP48Q86UV5 1035 aa12.82□□□□□ -0.36
LSM3-201ENST00000306024 PARP4Q9UKK3 1724 aaKnown RBP12.82□□□□□ -0.36
LSM3-201ENST00000306024 PARP10Q53GL7 1025 aa12.81□□□□□ -0.36
LSM3-201ENST00000306024 USPL1Q5W0Q7 1092 aa12.81□□□□□ -0.36
LSM3-201ENST00000306024 LDHAL6AQ6ZMR3 332 aa12.81□□□□□ -0.36
LSM3-201ENST00000306024 SIRT2Q8IXJ6 389 aa12.81□□□□□ -0.36
LSM3-201ENST00000306024 TMX3Q96JJ7 454 aa12.81□□□□□ -0.36
LSM3-201ENST00000306024 KIF2CQ99661 725 aa12.81□□□□□ -0.36
LSM3-201ENST00000306024 CCDC8Q9H0W5 538 aaPredicted RBP12.81□□□□□ -0.36
LSM3-201ENST00000306024 METTL24Q5JXM2 366 aa12.81□□□□□ -0.36
LSM3-201ENST00000306024 TSHZ3Q63HK5 1081 aa12.81□□□□□ -0.36
LSM3-201ENST00000306024 SLC4A9Q96Q91 983 aa12.81□□□□□ -0.36
LSM3-201ENST00000306024 MX1P20591 662 aa12.81□□□□□ -0.36
LSM3-201ENST00000306024 PTGS1P23219 599 aa12.81□□□□□ -0.36
LSM3-201ENST00000306024 IGHMBP2P38935 993 aaKnown RBP12.81□□□□□ -0.36
LSM3-201ENST00000306024 PYCARDQ9ULZ3 195 aa12.81□□□□□ -0.36
LSM3-201ENST00000306024 SMTNL1A8MU46 457 aa12.8□□□□□ -0.36
LSM3-201ENST00000306024 GOLGA6L19H0YKK7 550 aa12.8□□□□□ -0.36
LSM3-201ENST00000306024 POLR3GO15318 223 aaPredicted RBP12.8□□□□□ -0.36
LSM3-201ENST00000306024 CCDC24Q8N4L8 307 aa12.8□□□□□ -0.36
LSM3-201ENST00000306024 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.8□□□□□ -0.36
LSM3-201ENST00000306024 TPTE2Q6XPS3 522 aa12.8□□□□□ -0.36
LSM3-201ENST00000306024 ZFP91Q96JP5 570 aaPredicted RBP12.8□□□□□ -0.36
LSM3-201ENST00000306024 SRP68Q9UHB9 627 aaKnown RBP12.8□□□□□ -0.36
LSM3-201ENST00000306024 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.8□□□□□ -0.36
LSM3-201ENST00000306024 GADD45BO75293 160 aaPredicted RBP12.8□□□□□ -0.36
LSM3-201ENST00000306024 MAP4K4O95819 1239 aaPredicted RBP12.8□□□□□ -0.36
LSM3-201ENST00000306024 CCDC186Q7Z3E2 898 aa12.8□□□□□ -0.36
LSM3-201ENST00000306024 LINC00116Q8NCU8 138 aa12.8□□□□□ -0.36
LSM3-201ENST00000306024 VPS37CA5D8V6 355 aaPredicted RBP12.79□□□□□ -0.36
LSM3-201ENST00000306024 ERVV-1B6SEH8 477 aa12.79□□□□□ -0.36
LSM3-201ENST00000306024 RPS6KA4O75676 772 aa12.79□□□□□ -0.36
LSM3-201ENST00000306024 ZRSR1Q15695 479 aaKnown RBP12.79□□□□□ -0.36
LSM3-201ENST00000306024 UPF3BQ9BZI7 483 aaKnown RBP12.79□□□□□ -0.36
LSM3-201ENST00000306024 BAG6P46379 1132 aa12.79□□□□□ -0.36
LSM3-201ENST00000306024 EIF5P55010 431 aaKnown RBP12.79□□□□□ -0.36
LSM3-201ENST00000306024 TXNRD1Q16881 649 aa12.79□□□□□ -0.36
LSM3-201ENST00000306024 ZNF397Q8NF99 534 aaPredicted RBP12.79□□□□□ -0.36
LSM3-201ENST00000306024 SSH3Q8TE77 659 aa12.79□□□□□ -0.36
LSM3-201ENST00000306024 SMC3Q9UQE7 1217 aa12.79□□□□□ -0.36
LSM3-201ENST00000306024 PAXBP1Q9Y5B6 917 aa12.79□□□□□ -0.36
LSM3-201ENST00000306024 NLRP10Q86W26 655 aa12.79□□□□□ -0.36
LSM3-201ENST00000306024 VPS37DQ86XT2 251 aa12.79□□□□□ -0.36
LSM3-201ENST00000306024 KLHL34Q8N239 644 aa12.79□□□□□ -0.36
LSM3-201ENST00000306024 ZBTB38Q8NAP3 1195 aaPredicted RBP12.79□□□□□ -0.36
LSM3-201ENST00000306024 ARGLU1Q9NWB6 273 aaPredicted RBP12.79□□□□□ -0.36
LSM3-201ENST00000306024 CWC15Q9P013 229 aaKnown RBP12.79□□□□□ -0.36
LSM3-201ENST00000306024 PCCAP05165 728 aaPredicted RBP12.78□□□□□ -0.36
LSM3-201ENST00000306024 CCDC152Q4G0S7 254 aa12.78□□□□□ -0.36
LSM3-201ENST00000306024 NLRP3Q96P20 1036 aa12.78□□□□□ -0.36
LSM3-201ENST00000306024 USP26Q9BXU7 913 aa12.78□□□□□ -0.36
LSM3-201ENST00000306024 ZNF594Q96JF6 807 aaPredicted RBP12.78□□□□□ -0.36
LSM3-201ENST00000306024 NYXQ9GZU5 481 aa12.78□□□□□ -0.36
LSM3-201ENST00000306024 COL15A1P39059 1388 aa12.78□□□□□ -0.36
LSM3-201ENST00000306024 TERF2Q15554 542 aa12.78□□□□□ -0.36
LSM3-201ENST00000306024 ZBTB9Q96C00 473 aa12.78□□□□□ -0.36
LSM3-201ENST00000306024 NCBP1Q09161 790 aaKnown RBP12.77□□□□□ -0.36
LSM3-201ENST00000306024 PTPN14Q15678 1187 aa12.77□□□□□ -0.36
LSM3-201ENST00000306024 CEP135Q66GS9 1140 aa12.77□□□□□ -0.36
LSM3-201ENST00000306024 KIAA1524Q8TCG1 905 aa12.77□□□□□ -0.36
LSM3-201ENST00000306024 PDE8AO60658 829 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms