RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PODXL2Q9NZ53 605 aa19.17■□□□□ 0.66
CCDC88B-201ENST00000301897 G3V3G9 751 aa19.16■□□□□ 0.66
CCDC88B-201ENST00000301897 DCAF8Q5TAQ9 597 aa19.16■□□□□ 0.66
CCDC88B-201ENST00000301897 RGMBQ6NW40 437 aa19.16■□□□□ 0.66
CCDC88B-201ENST00000301897 ZBTB38Q8NAP3 1195 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-201ENST00000301897 TBC1D16Q8TBP0 767 aa19.16■□□□□ 0.66
CCDC88B-201ENST00000301897 MCOLN1Q9GZU1 580 aa19.16■□□□□ 0.66
CCDC88B-201ENST00000301897 VIL1P09327 827 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-201ENST00000301897 RIC3Q7Z5B4 369 aa19.15■□□□□ 0.66
CCDC88B-201ENST00000301897 SAGE1Q9NXZ1 904 aa19.15■□□□□ 0.66
CCDC88B-201ENST00000301897 CALD1Q05682 793 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-201ENST00000301897 DOK7Q18PE1 504 aa19.14■□□□□ 0.65
CCDC88B-201ENST00000301897 KIF4BQ2VIQ3 1234 aa19.14■□□□□ 0.65
CCDC88B-201ENST00000301897 CCDC152Q4G0S7 254 aa19.14■□□□□ 0.65
CCDC88B-201ENST00000301897 RTL5Q5HYW3 569 aaPredicted RBP19.14■□□□□ 0.65
CCDC88B-201ENST00000301897 SULF1Q8IWU6 871 aa19.14■□□□□ 0.65
CCDC88B-201ENST00000301897 ZNF428Q96B54 188 aa19.14■□□□□ 0.65
CCDC88B-201ENST00000301897 ANKIB1Q9P2G1 1089 aa19.14■□□□□ 0.65
CCDC88B-201ENST00000301897 GGA1Q9UJY5 639 aa19.14■□□□□ 0.65
CCDC88B-201ENST00000301897 RTL9Q8NET4 1388 aa19.14■□□□□ 0.65
CCDC88B-201ENST00000301897 DGKZQ13574 1117 aa19.13■□□□□ 0.65
CCDC88B-201ENST00000301897 CCDC191Q8NCU4 936 aa19.13■□□□□ 0.65
CCDC88B-201ENST00000301897 ZNF609O15014 1411 aa19.13■□□□□ 0.65
CCDC88B-201ENST00000301897 UFL1O94874 794 aa19.12■□□□□ 0.65
CCDC88B-201ENST00000301897 ZNF157P51786 506 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-201ENST00000301897 RBM26Q5T8P6 1007 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-201ENST00000301897 AGBL3Q8NEM8 1001 aa19.12■□□□□ 0.65
CCDC88B-201ENST00000301897 MBIPQ9NS73 344 aa19.12■□□□□ 0.65
CCDC88B-201ENST00000301897 ADAMTS8Q9UP79 889 aa19.12■□□□□ 0.65
CCDC88B-201ENST00000301897 PDE4DIPQ5VU43 2346 aa19.12■□□□□ 0.65
CCDC88B-201ENST00000301897 AKAP11Q9UKA4 1901 aa19.12■□□□□ 0.65
CCDC88B-201ENST00000301897 FAM155AB1AL88 458 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-201ENST00000301897 ADM5C9JUS6 153 aa19.11■□□□□ 0.65
CCDC88B-201ENST00000301897 EGFRP00533 1210 aa19.11■□□□□ 0.65
CCDC88B-201ENST00000301897 PCCAP05165 728 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-201ENST00000301897 REM2Q8IYK8 340 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-201ENST00000301897 KCNQ5Q9NR82 932 aa19.11■□□□□ 0.65
CCDC88B-201ENST00000301897 IFT57Q9NWB7 429 aa19.11■□□□□ 0.65
CCDC88B-201ENST00000301897 GGA3Q9NZ52 723 aa19.11■□□□□ 0.65
CCDC88B-201ENST00000301897 SCN9AQ15858 1988 aa19.11■□□□□ 0.65
CCDC88B-201ENST00000301897 PDE8AO60658 829 aa19.1■□□□□ 0.65
CCDC88B-201ENST00000301897 DDX58O95786 925 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-201ENST00000301897 ZNF853P0CG23 659 aa19.1■□□□□ 0.65
CCDC88B-201ENST00000301897 GNAI1P63096 354 aa19.1■□□□□ 0.65
CCDC88B-201ENST00000301897 ZIC5Q96T25 663 aa19.1■□□□□ 0.65
CCDC88B-201ENST00000301897 COL4A1P02462 1669 aa19.09■□□□□ 0.65
CCDC88B-201ENST00000301897 SLC34A2O95436 690 aa19.09■□□□□ 0.65
CCDC88B-201ENST00000301897 ZNF280AP59817 542 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-201ENST00000301897 FKBP1BP68106 108 aa19.09■□□□□ 0.65
CCDC88B-201ENST00000301897 DDX10Q13206 875 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-201ENST00000301897 RSBN1LQ6PCB5 846 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-201ENST00000301897 SEC31BQ9NQW1 1179 aa19.09■□□□□ 0.65
CCDC88B-201ENST00000301897 CWC25Q9NXE8 425 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-201ENST00000301897 PSME4Q14997 1843 aa19.09■□□□□ 0.65
CCDC88B-201ENST00000301897 XDHP47989 1333 aa19.08■□□□□ 0.65
CCDC88B-201ENST00000301897 SLC10A3P09131 477 aa19.08■□□□□ 0.64
CCDC88B-201ENST00000301897 KIF23Q02241 960 aaPredicted RBP19.08■□□□□ 0.64
CCDC88B-201ENST00000301897 DLK2Q6UY11 383 aa19.08■□□□□ 0.64
CCDC88B-201ENST00000301897 ANKRD18AQ8IVF6 992 aa19.08■□□□□ 0.64
CCDC88B-201ENST00000301897 MYD88Q99836 296 aa19.08■□□□□ 0.64
CCDC88B-201ENST00000301897 PITPNM2Q9BZ72 1349 aa19.07■□□□□ 0.64
CCDC88B-201ENST00000301897 CDCA5Q96FF9 252 aa19.07■□□□□ 0.64
CCDC88B-201ENST00000301897 PHAXQ9H814 394 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-201ENST00000301897 ATP2B4P23634 1241 aa19.06■□□□□ 0.64
CCDC88B-201ENST00000301897 SCARF1Q14162 830 aa19.06■□□□□ 0.64
CCDC88B-201ENST00000301897 CCDC30Q5VVM6 783 aa19.06■□□□□ 0.64
CCDC88B-201ENST00000301897 PODNQ7Z5L7 613 aa19.06■□□□□ 0.64
CCDC88B-201ENST00000301897 CDC5LQ99459 802 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-201ENST00000301897 METTL22Q9BUU2 404 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-201ENST00000301897 RNF186Q9NXI6 227 aa19.06■□□□□ 0.64
CCDC88B-201ENST00000301897 USP17L3A6NCW0 530 aa19.05■□□□□ 0.64
CCDC88B-201ENST00000301897 USP17L4A6NCW7 530 aa19.05■□□□□ 0.64
CCDC88B-201ENST00000301897 TRPA1O75762 1119 aa19.05■□□□□ 0.64
CCDC88B-201ENST00000301897 USP17L8P0C7I0 530 aa19.05■□□□□ 0.64
CCDC88B-201ENST00000301897 ANGEL2Q5VTE6 544 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-201ENST00000301897 USP17L1Q7RTZ2 530 aa19.05■□□□□ 0.64
CCDC88B-201ENST00000301897 PAPPA2Q9BXP8 1791 aa19.04■□□□□ 0.64
CCDC88B-201ENST00000301897 GMLQ99445 158 aa19.04■□□□□ 0.64
CCDC88B-201ENST00000301897 MYOZ2Q9NPC6 264 aa19.04■□□□□ 0.64
CCDC88B-201ENST00000301897 MMP14P50281 582 aa19.03■□□□□ 0.64
CCDC88B-201ENST00000301897 CSRNP1Q96S65 589 aa19.03■□□□□ 0.64
CCDC88B-201ENST00000301897 MYH3P11055 1940 aa19.02■□□□□ 0.64
CCDC88B-201ENST00000301897 ELL2O00472 640 aaPredicted RBP19.02■□□□□ 0.64
CCDC88B-201ENST00000301897 APAF1O14727 1248 aa19.02■□□□□ 0.64
CCDC88B-201ENST00000301897 CTSWP56202 376 aa19.02■□□□□ 0.64
CCDC88B-201ENST00000301897 RASAL3Q86YV0 1011 aa19.02■□□□□ 0.64
CCDC88B-201ENST00000301897 BSDC1Q9NW68 430 aaPredicted RBP19.02■□□□□ 0.64
CCDC88B-201ENST00000301897 MED23Q9ULK4 1368 aa19.02■□□□□ 0.64
CCDC88B-201ENST00000301897 TNRC18O15417 2968 aaPredicted RBP19.02■□□□□ 0.63
CCDC88B-201ENST00000301897 ASTN2O75129 1339 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-201ENST00000301897 NEXNQ0ZGT2 675 aa19.01■□□□□ 0.63
CCDC88B-201ENST00000301897 CTU1Q7Z7A3 348 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-201ENST00000301897 OGFOD1Q8N543 542 aa19.01■□□□□ 0.63
CCDC88B-201ENST00000301897 MYO3BQ8WXR4 1341 aa19■□□□□ 0.63
CCDC88B-201ENST00000301897 KSR2Q6VAB6 950 aa19■□□□□ 0.63
CCDC88B-201ENST00000301897 CCDC85AQ96PX6 553 aaPredicted RBP19■□□□□ 0.63
CCDC88B-201ENST00000301897 PRKRIP1Q9H875 184 aaPredicted RBP19■□□□□ 0.63
CCDC88B-201ENST00000301897 MAP3K2Q9Y2U5 619 aa19■□□□□ 0.63
CCDC88B-201ENST00000301897 NF2P35240 595 aa18.99■□□□□ 0.63
CCDC88B-201ENST00000301897 C8orf58Q8NAV2 365 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms