RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 LOC102724159A0A0B4J2E5 919 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 KINO60870 393 aaKnown RBP15.72■□□□□ 0.11
SKA3-201ENST00000298260 TADA3O75528 432 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 GLRX3O76003 335 aaKnown RBP15.72■□□□□ 0.11
SKA3-201ENST00000298260 ETF1P62495 437 aaKnown RBP15.72■□□□□ 0.11
SKA3-201ENST00000298260 PWP2Q15269 919 aaKnown RBP15.72■□□□□ 0.11
SKA3-201ENST00000298260 RNF20Q5VTR2 975 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 CCDC30Q5VVM6 783 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 FSIP1Q8NA03 581 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 RUFY2Q8WXA3 655 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 TSPYL1Q9H0U9 437 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 PLEKHA4Q9H4M7 779 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 ARGLU1Q9NWB6 273 aaPredicted RBP15.72■□□□□ 0.11
SKA3-201ENST00000298260 ME1P48163 572 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 POLA2Q14181 598 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 UTP14AQ9BVJ6 771 aaKnown RBP15.72■□□□□ 0.11
SKA3-201ENST00000298260 ADAM21Q9UKJ8 722 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 RPS6KB1P23443 525 aa15.71■□□□□ 0.11
SKA3-201ENST00000298260 ADD1P35611 737 aaKnown RBP15.71■□□□□ 0.11
SKA3-201ENST00000298260 TAF7Q15545 349 aaPredicted RBP15.71■□□□□ 0.11
SKA3-201ENST00000298260 CC2D1AQ6P1N0 951 aaPredicted RBP15.71■□□□□ 0.11
SKA3-201ENST00000298260 TRIM65Q6PJ69 517 aa15.71■□□□□ 0.11
SKA3-201ENST00000298260 CEP57L1Q8IYX8 460 aa15.71■□□□□ 0.11
SKA3-201ENST00000298260 SDF4Q9BRK5 362 aa15.71■□□□□ 0.11
SKA3-201ENST00000298260 BOLA2Q9H3K6 86 aa15.71■□□□□ 0.11
SKA3-201ENST00000298260 TLR7Q9NYK1 1049 aaKnown RBP15.71■□□□□ 0.11
SKA3-201ENST00000298260 RRP15Q9Y3B9 282 aaKnown RBP15.71■□□□□ 0.11
SKA3-201ENST00000298260 CCDC73Q6ZRK6 1079 aa15.71■□□□□ 0.1
SKA3-201ENST00000298260 MAP4K1Q92918 833 aa15.71■□□□□ 0.1
SKA3-201ENST00000298260 NUDT16Q96DE0 195 aaKnown RBP15.71■□□□□ 0.1
SKA3-201ENST00000298260 ATG3Q9NT62 314 aa15.71■□□□□ 0.1
SKA3-201ENST00000298260 AACSQ86V21 672 aa15.7■□□□□ 0.1
SKA3-201ENST00000298260 ANO10Q9NW15 660 aa15.7■□□□□ 0.1
SKA3-201ENST00000298260 CASQ1P31415 396 aa15.7■□□□□ 0.1
SKA3-201ENST00000298260 DPF2Q92785 391 aa15.7■□□□□ 0.1
SKA3-201ENST00000298260 WDR24Q96S15 920 aa15.7■□□□□ 0.1
SKA3-201ENST00000298260 OSBPL5Q9H0X9 879 aaPredicted RBP15.7■□□□□ 0.1
SKA3-201ENST00000298260 PARP3Q9Y6F1 533 aa15.7■□□□□ 0.1
SKA3-201ENST00000298260 KIF2AO00139 706 aaPredicted RBP15.69■□□□□ 0.1
SKA3-201ENST00000298260 HSPA2P54652 639 aa15.69■□□□□ 0.1
SKA3-201ENST00000298260 MUM1L1Q5H9M0 696 aa15.69■□□□□ 0.1
SKA3-201ENST00000298260 WWC2Q6AWC2 1192 aa15.69■□□□□ 0.1
SKA3-201ENST00000298260 ECHDC1Q9NTX5 307 aa15.69■□□□□ 0.1
SKA3-201ENST00000298260 N4BP1O75113 896 aaKnown RBP15.69■□□□□ 0.1
SKA3-201ENST00000298260 GTF2A1P52655 376 aaPredicted RBP15.69■□□□□ 0.1
SKA3-201ENST00000298260 GSDMDP57764 484 aa15.69■□□□□ 0.1
SKA3-201ENST00000298260 CCT2P78371 535 aaKnown RBP15.69■□□□□ 0.1
SKA3-201ENST00000298260 SRLQ86TD4 932 aa15.69■□□□□ 0.1
SKA3-201ENST00000298260 CREBRFQ8IUR6 639 aa15.69■□□□□ 0.1
SKA3-201ENST00000298260 THEMISQ8N1K5 641 aaPredicted RBP15.69■□□□□ 0.1
SKA3-201ENST00000298260 SUGCTQ9HAC7 445 aa15.69■□□□□ 0.1
SKA3-201ENST00000298260 OTUD7BQ6GQQ9 843 aa15.68■□□□□ 0.1
SKA3-201ENST00000298260 KLHL34Q8N239 644 aa15.68■□□□□ 0.1
SKA3-201ENST00000298260 CLASRPQ8N2M8 674 aaKnown RBP15.68■□□□□ 0.1
SKA3-201ENST00000298260 PARD6BQ9BYG5 372 aa15.68■□□□□ 0.1
SKA3-201ENST00000298260 UBXN6Q9BZV1 441 aa15.68■□□□□ 0.1
SKA3-201ENST00000298260 NCOA5Q9HCD5 579 aaKnown RBP15.68■□□□□ 0.1
SKA3-201ENST00000298260 UBR1Q8IWV7 1749 aa15.68■□□□□ 0.1
SKA3-201ENST00000298260 EDC4Q6P2E9 1401 aaKnown RBP15.68■□□□□ 0.1
SKA3-201ENST00000298260 MCM6Q14566 821 aa15.68■□□□□ 0.1
SKA3-201ENST00000298260 SART3Q15020 963 aaKnown RBP15.68■□□□□ 0.1
SKA3-201ENST00000298260 CCDC129Q6ZRS4 1044 aa15.68■□□□□ 0.1
SKA3-201ENST00000298260 KCNB2Q92953 911 aa15.68■□□□□ 0.1
SKA3-201ENST00000298260 AMOTL2Q9Y2J4 779 aa15.68■□□□□ 0.1
SKA3-201ENST00000298260 ROBO2Q9HCK4 1378 aa15.68■□□□□ 0.1
SKA3-201ENST00000298260 WASLO00401 505 aaPredicted RBP15.67■□□□□ 0.1
SKA3-201ENST00000298260 TFRCP02786 760 aaKnown RBP15.67■□□□□ 0.1
SKA3-201ENST00000298260 FAM193AP78312 1265 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 HDGFL1Q5TGJ6 251 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 NBPF6Q5VWK0 638 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 Q6ZUG5 572 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 PACS2Q86VP3 889 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 ENGASEQ8NFI3 743 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 NBPF4Q96M43 638 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 DRC1Q96MC2 740 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 PI4KAP2A4QPH2 592 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 PHACTR2O75167 634 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 PSMA5P28066 241 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 SCRN1Q12765 414 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 PI4KAP1Q8N8J0 262 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 FSD1Q9BTV5 496 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 VPS18Q9P253 973 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 CFAP45Q9UL16 551 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 PSDA5PKW4 1024 aaPredicted RBP15.67■□□□□ 0.1
SKA3-201ENST00000298260 CAVIN2O95810 425 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 HDGFP51858 240 aaKnown RBP15.67■□□□□ 0.1
SKA3-201ENST00000298260 NDUFA8P51970 172 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 GPS2Q13227 327 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 KLHDC4Q8TBB5 520 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 FUT8Q9BYC5 575 aa15.67■□□□□ 0.1
SKA3-201ENST00000298260 IRX2Q9BZI1 471 aaPredicted RBP15.67■□□□□ 0.1
SKA3-201ENST00000298260 TMEM232C9JQI7 657 aa15.66■□□□□ 0.1
SKA3-201ENST00000298260 FAM160A1Q05DH4 1040 aa15.66■□□□□ 0.1
SKA3-201ENST00000298260 CCDC9Q9Y3X0 531 aaKnown RBP15.66■□□□□ 0.1
SKA3-201ENST00000298260 FBXO18Q8NFZ0 1043 aa15.66■□□□□ 0.1
SKA3-201ENST00000298260 PDE11AQ9HCR9 933 aa15.66■□□□□ 0.1
SKA3-201ENST00000298260 NPHP4O75161 1426 aaPredicted RBP15.66■□□□□ 0.1
SKA3-201ENST00000298260 E2F4Q16254 413 aa15.65■□□□□ 0.1
SKA3-201ENST00000298260 CHST3Q7LGC8 479 aa15.65■□□□□ 0.1
SKA3-201ENST00000298260 SECISBP2LQ93073 1101 aaKnown RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms