RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ALDH8A1Q9H2A2 487 aaPredicted RBP21.82■■□□□ 1.08
SHKBP1-201ENST00000291842 JAK2O60674 1132 aa21.81■■□□□ 1.08
SHKBP1-201ENST00000291842 HSP90B1P14625 803 aaKnown RBP21.81■■□□□ 1.08
SHKBP1-201ENST00000291842 RFX7Q2KHR2 1363 aa21.81■■□□□ 1.08
SHKBP1-201ENST00000291842 FKBP4Q02790 459 aaKnown RBP eCLIP21.81■■□□□ 1.08
SHKBP1-201ENST00000291842 GPR108Q9NPR9 543 aa21.81■■□□□ 1.08
SHKBP1-201ENST00000291842 ABCA3Q99758 1704 aa21.8■■□□□ 1.08
SHKBP1-201ENST00000291842 TOGARAM1Q9Y4F4 1720 aa21.8■■□□□ 1.08
SHKBP1-201ENST00000291842 CEP126Q9P2H0 1117 aa21.8■■□□□ 1.08
SHKBP1-201ENST00000291842 SH3TC1Q8TE82 1336 aa21.8■■□□□ 1.08
SHKBP1-201ENST00000291842 KAT6BQ8WYB5 2073 aa21.8■■□□□ 1.08
SHKBP1-201ENST00000291842 GPTP24298 496 aa21.8■■□□□ 1.08
SHKBP1-201ENST00000291842 ADORA1P30542 326 aa21.8■■□□□ 1.08
SHKBP1-201ENST00000291842 DNAJC5Q9H3Z4 198 aa21.8■■□□□ 1.08
SHKBP1-201ENST00000291842 ATG3Q9NT62 314 aa21.8■■□□□ 1.08
SHKBP1-201ENST00000291842 FGD1P98174 961 aa21.79■■□□□ 1.08
SHKBP1-201ENST00000291842 BRF1Q92994 677 aa21.79■■□□□ 1.08
SHKBP1-201ENST00000291842 PALLDQ8WX93 1383 aa21.79■■□□□ 1.08
SHKBP1-201ENST00000291842 KIF6Q6ZMV9 814 aa21.79■■□□□ 1.08
SHKBP1-201ENST00000291842 CIAO1O76071 339 aa21.78■■□□□ 1.08
SHKBP1-201ENST00000291842 PDCP20941 246 aa21.78■■□□□ 1.08
SHKBP1-201ENST00000291842 MSNP26038 577 aaKnown RBP21.78■■□□□ 1.08
SHKBP1-201ENST00000291842 GIMAP6Q6P9H5 292 aa21.78■■□□□ 1.08
SHKBP1-201ENST00000291842 DDX11Q96FC9 970 aa21.78■■□□□ 1.08
SHKBP1-201ENST00000291842 HLFQ16534 295 aa21.77■■□□□ 1.08
SHKBP1-201ENST00000291842 ZMYM1Q5SVZ6 1142 aa21.77■■□□□ 1.08
SHKBP1-201ENST00000291842 GORABQ5T7V8 394 aa21.77■■□□□ 1.08
SHKBP1-201ENST00000291842 TTC6Q86TZ1 520 aa21.77■■□□□ 1.08
SHKBP1-201ENST00000291842 GTF3C6Q969F1 213 aa21.77■■□□□ 1.08
SHKBP1-201ENST00000291842 HELLSQ9NRZ9 838 aa21.77■■□□□ 1.08
SHKBP1-201ENST00000291842 TFIP11Q9UBB9 837 aaKnown RBP21.77■■□□□ 1.08
SHKBP1-201ENST00000291842 CSPP1Q1MSJ5 1256 aa21.77■■□□□ 1.08
SHKBP1-201ENST00000291842 TAF7LQ5H9L4 462 aa21.77■■□□□ 1.08
SHKBP1-201ENST00000291842 MAST3O60307 1309 aa21.76■■□□□ 1.07
SHKBP1-201ENST00000291842 HSPD1P10809 573 aaKnown RBP21.76■■□□□ 1.07
SHKBP1-201ENST00000291842 HCLS1P14317 486 aaPredicted RBP21.76■■□□□ 1.07
SHKBP1-201ENST00000291842 KRT85P78386 507 aa21.76■■□□□ 1.07
SHKBP1-201ENST00000291842 M0R2C6 588 aa21.76■■□□□ 1.07
SHKBP1-201ENST00000291842 RNF113AO15541 343 aaKnown RBP21.76■■□□□ 1.07
SHKBP1-201ENST00000291842 SYTL4Q96C24 671 aaPredicted RBP21.76■■□□□ 1.07
SHKBP1-201ENST00000291842 XAGE2Q96GT9 111 aa21.76■■□□□ 1.07
SHKBP1-201ENST00000291842 STARD3NLO95772 234 aa21.75■■□□□ 1.07
SHKBP1-201ENST00000291842 CHST3Q7LGC8 479 aa21.75■■□□□ 1.07
SHKBP1-201ENST00000291842 PPFIA3O75145 1194 aa21.75■■□□□ 1.07
SHKBP1-201ENST00000291842 SCARF1Q14162 830 aa21.75■■□□□ 1.07
SHKBP1-201ENST00000291842 TTC39AQ5SRH9 613 aa21.75■■□□□ 1.07
SHKBP1-201ENST00000291842 TTLL5Q6EMB2 1281 aa21.75■■□□□ 1.07
SHKBP1-201ENST00000291842 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.75■■□□□ 1.07
SHKBP1-201ENST00000291842 PCCAP05165 728 aaPredicted RBP21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 SCRN1Q12765 414 aa21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 HSP90AB3PQ58FF7 597 aa21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 KDM4FA0A1W2PPD8 638 aa21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 FOSBP53539 338 aa21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 APOBRQ0VD83 1088 aa21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 IFIT5Q13325 482 aaKnown RBP21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 CCDC158Q5M9N0 1113 aa21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 PI16Q6UXB8 463 aa21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 MPNDQ8N594 471 aa21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 ZBTB38Q8NAP3 1195 aaPredicted RBP21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 OSBP2Q969R2 916 aa21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 SLC4A9Q96Q91 983 aa21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 DSCC1Q9BVC3 393 aa21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 NAP1L2Q9ULW6 460 aaPredicted RBP21.74■■□□□ 1.07
SHKBP1-201ENST00000291842 DHX32Q7L7V1 743 aaKnown RBP21.73■■□□□ 1.07
SHKBP1-201ENST00000291842 TEX13AQ9BXU3 409 aaPredicted RBP21.73■■□□□ 1.07
SHKBP1-201ENST00000291842 TRIM28Q13263 835 aaKnown RBP21.73■■□□□ 1.07
SHKBP1-201ENST00000291842 NOL7Q9UMY1 257 aaKnown RBP21.73■■□□□ 1.07
SHKBP1-201ENST00000291842 MAP3K15Q6ZN16 1313 aa21.72■■□□□ 1.07
SHKBP1-201ENST00000291842 E7EWF7 191 aa21.72■■□□□ 1.07
SHKBP1-201ENST00000291842 LETM1O95202 739 aaPredicted RBP21.72■■□□□ 1.07
SHKBP1-201ENST00000291842 WASHC4Q2M389 1173 aa21.72■■□□□ 1.07
SHKBP1-201ENST00000291842 HS1BP3Q53T59 392 aa21.72■■□□□ 1.07
SHKBP1-201ENST00000291842 USP25Q9UHP3 1055 aa21.72■■□□□ 1.07
SHKBP1-201ENST00000291842 CCT2P78371 535 aaKnown RBP21.72■■□□□ 1.07
SHKBP1-201ENST00000291842 GIGYF2Q6Y7W6 1299 aaKnown RBP21.72■■□□□ 1.07
SHKBP1-201ENST00000291842 VSIG10Q8N0Z9 540 aa21.72■■□□□ 1.07
SHKBP1-201ENST00000291842 LIG1P18858 919 aa21.71■■□□□ 1.07
SHKBP1-201ENST00000291842 GREM2Q9H772 168 aa21.71■■□□□ 1.07
SHKBP1-201ENST00000291842 AKAP2Q9Y2D5 859 aa21.71■■□□□ 1.07
SHKBP1-201ENST00000291842 CSF1RP07333 972 aa21.7■■□□□ 1.07
SHKBP1-201ENST00000291842 ZAP70P43403 619 aa21.7■■□□□ 1.07
SHKBP1-201ENST00000291842 CAMK4Q16566 473 aa21.7■■□□□ 1.07
SHKBP1-201ENST00000291842 SPATA32Q96LK8 384 aa21.7■■□□□ 1.07
SHKBP1-201ENST00000291842 H3BQV1 296 aa21.7■■□□□ 1.06
SHKBP1-201ENST00000291842 HAND2P61296 217 aa21.7■■□□□ 1.06
SHKBP1-201ENST00000291842 IFFO2Q5TF58 517 aa21.7■■□□□ 1.06
SHKBP1-201ENST00000291842 NLRP10Q86W26 655 aa21.7■■□□□ 1.06
SHKBP1-201ENST00000291842 NCOA5Q9HCD5 579 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-201ENST00000291842 ZBTB1Q9Y2K1 713 aa21.7■■□□□ 1.06
SHKBP1-201ENST00000291842 LAMA4Q16363 1823 aa21.7■■□□□ 1.06
SHKBP1-201ENST00000291842 PTMAP06454 111 aaKnown RBP21.69■■□□□ 1.06
SHKBP1-201ENST00000291842 HMGB1P09429 215 aaKnown RBP21.69■■□□□ 1.06
SHKBP1-201ENST00000291842 PDIA4P13667 645 aaKnown RBP21.69■■□□□ 1.06
SHKBP1-201ENST00000291842 ITGA6P23229 1130 aa21.69■■□□□ 1.06
SHKBP1-201ENST00000291842 FAM184AQ8NB25 1140 aa21.69■■□□□ 1.06
SHKBP1-201ENST00000291842 EXOSC10Q01780 885 aaKnown RBP21.69■■□□□ 1.06
SHKBP1-201ENST00000291842 METTL24Q5JXM2 366 aa21.69■■□□□ 1.06
SHKBP1-201ENST00000291842 LDHAL6AQ6ZMR3 332 aa21.69■■□□□ 1.06
SHKBP1-201ENST00000291842 TBC1D2BQ9UPU7 963 aa21.69■■□□□ 1.06
SHKBP1-201ENST00000291842 A0A0G2JS52 829 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms