RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 IP6K1Q92551 441 aa13.33□□□□□ -0.28
VPS33A-201ENST00000267199 WASF1Q92558 559 aa13.33□□□□□ -0.28
VPS33A-201ENST00000267199 TANGO6Q9C0B7 1094 aa13.33□□□□□ -0.28
VPS33A-201ENST00000267199 GCP02774 474 aa13.33□□□□□ -0.28
VPS33A-201ENST00000267199 KLHDC4Q8TBB5 520 aa13.33□□□□□ -0.28
VPS33A-201ENST00000267199 USP44Q9H0E7 712 aa13.33□□□□□ -0.28
VPS33A-201ENST00000267199 IFNKQ9P0W0 207 aa13.33□□□□□ -0.28
VPS33A-201ENST00000267199 RAD50Q92878 1312 aa13.33□□□□□ -0.28
VPS33A-201ENST00000267199 KIF24Q5T7B8 1368 aa13.32□□□□□ -0.28
VPS33A-201ENST00000267199 BRD1O95696 1058 aa13.32□□□□□ -0.28
VPS33A-201ENST00000267199 LRMPQ12912 555 aa13.32□□□□□ -0.28
VPS33A-201ENST00000267199 TRMT112Q9UI30 125 aaKnown RBP13.32□□□□□ -0.28
VPS33A-201ENST00000267199 TXLNBQ8N3L3 684 aa13.32□□□□□ -0.28
VPS33A-201ENST00000267199 TBX22Q9Y458 520 aa13.32□□□□□ -0.28
VPS33A-201ENST00000267199 KLF18A0A0U1RQI7 1052 aa13.32□□□□□ -0.28
VPS33A-201ENST00000267199 SHTN1A0MZ66 631 aa13.32□□□□□ -0.28
VPS33A-201ENST00000267199 PLEKHG3A1L390 1219 aa13.32□□□□□ -0.28
VPS33A-201ENST00000267199 MARCKSP29966 332 aaPredicted RBP13.32□□□□□ -0.28
VPS33A-201ENST00000267199 IFIT3O14879 490 aaKnown RBP13.32□□□□□ -0.28
VPS33A-201ENST00000267199 CHST3Q7LGC8 479 aa13.32□□□□□ -0.28
VPS33A-201ENST00000267199 PHF23Q9BUL5 403 aaPredicted RBP13.32□□□□□ -0.28
VPS33A-201ENST00000267199 DDX21Q9NR30 783 aaKnown RBP eCLIP13.32□□□□□ -0.28
VPS33A-201ENST00000267199 YEATS2Q9ULM3 1422 aa13.32□□□□□ -0.28
VPS33A-201ENST00000267199 RNMTO43148 476 aaKnown RBP13.31□□□□□ -0.28
VPS33A-201ENST00000267199 STIM1Q13586 685 aa13.31□□□□□ -0.28
VPS33A-201ENST00000267199 NUP88Q99567 741 aaPredicted RBP13.31□□□□□ -0.28
VPS33A-201ENST00000267199 GOLGA8AA7E2F4 631 aa13.31□□□□□ -0.28
VPS33A-201ENST00000267199 CAPN2P17655 700 aa13.31□□□□□ -0.28
VPS33A-201ENST00000267199 IGHMBP2P38935 993 aaKnown RBP13.31□□□□□ -0.28
VPS33A-201ENST00000267199 MRPS27Q92552 414 aaKnown RBP13.31□□□□□ -0.28
VPS33A-201ENST00000267199 FAM227BQ96M60 508 aa13.31□□□□□ -0.28
VPS33A-201ENST00000267199 CBX8Q9HC52 389 aa13.31□□□□□ -0.28
VPS33A-201ENST00000267199 KIF1BO60333 1816 aa13.31□□□□□ -0.28
VPS33A-201ENST00000267199 HSPA4P34932 840 aa13.31□□□□□ -0.28
VPS33A-201ENST00000267199 SLC12A7Q9Y666 1083 aa13.31□□□□□ -0.28
VPS33A-201ENST00000267199 MAP3K12Q12852 859 aa13.3□□□□□ -0.28
VPS33A-201ENST00000267199 ANKRD18BA2A2Z9 1011 aa13.3□□□□□ -0.28
VPS33A-201ENST00000267199 TFCP2Q12800 502 aa13.3□□□□□ -0.28
VPS33A-201ENST00000267199 KARSQ15046 597 aaKnown RBP13.3□□□□□ -0.28
VPS33A-201ENST00000267199 IL17REQ8NFR9 667 aa13.3□□□□□ -0.28
VPS33A-201ENST00000267199 NCOA7Q8NI08 942 aa13.3□□□□□ -0.28
VPS33A-201ENST00000267199 IARSP41252 1262 aaKnown RBP13.3□□□□□ -0.28
VPS33A-201ENST00000267199 SYKP43405 635 aa13.3□□□□□ -0.28
VPS33A-201ENST00000267199 TAX1BP1Q86VP1 789 aa13.3□□□□□ -0.28
VPS33A-201ENST00000267199 BABAM1Q9NWV8 329 aa13.3□□□□□ -0.28
VPS33A-201ENST00000267199 ZNF853P0CG23 659 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 AOX1Q06278 1338 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 APOBRQ0VD83 1088 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 MAP9Q49MG5 647 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 RNF187Q5TA31 235 aaPredicted RBP13.29□□□□□ -0.28
VPS33A-201ENST00000267199 CTR9Q6PD62 1173 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 ERO1AQ96HE7 468 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 CLTCL1P53675 1640 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 MATR3P43243 847 aaKnown RBP eCLIP13.29□□□□□ -0.28
VPS33A-201ENST00000267199 MNAT1P51948 309 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 CT47A1Q5JQC4 288 aaPredicted RBP13.29□□□□□ -0.28
VPS33A-201ENST00000267199 CCDC102BQ68D86 513 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 CDK5RAP3Q96JB5 506 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 FAM107BQ9H098 131 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 PAG1Q9NWQ8 432 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 PUF60Q9UHX1 559 aaKnown RBP13.29□□□□□ -0.28
VPS33A-201ENST00000267199 IL15P40933 162 aaPredicted RBP13.29□□□□□ -0.28
VPS33A-201ENST00000267199 GTF2A1P52655 376 aaPredicted RBP13.29□□□□□ -0.28
VPS33A-201ENST00000267199 CABLES1Q8TDN4 633 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 SSH3Q8TE77 659 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 UTP14AQ9BVJ6 771 aaKnown RBP13.29□□□□□ -0.28
VPS33A-201ENST00000267199 ZHX3Q9H4I2 956 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 PYCARDQ9ULZ3 195 aa13.29□□□□□ -0.28
VPS33A-201ENST00000267199 METAP2P50579 478 aaKnown RBP eCLIP13.28□□□□□ -0.28
VPS33A-201ENST00000267199 ZNF75DP51815 510 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 NBPF6Q5VWK0 638 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 IQCEQ6IPM2 695 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 GIMAP7Q8NHV1 300 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 NBPF4Q96M43 638 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 VPS18Q9P253 973 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 ERCC6L2Q5T890 1561 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 ZFYVE16Q7Z3T8 1539 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 CCDC196A0A1B0GTZ2 297 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 A0A1B0GVL5 298 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 HOXB7P09629 217 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 TMEM67Q5HYA8 995 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 BICDL1Q6ZP65 573 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 CCDC129Q6ZRS4 1044 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 LZTFL1Q9NQ48 299 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 NSFL1CQ9UNZ2 370 aaKnown RBP13.28□□□□□ -0.28
VPS33A-201ENST00000267199 CEP131Q9UPN4 1083 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 CROCC2H7BZ55 1655 aa13.28□□□□□ -0.28
VPS33A-201ENST00000267199 GOLGA6L9A6NEM1 432 aa13.27□□□□□ -0.28
VPS33A-201ENST00000267199 SLC27A2O14975 620 aa13.27□□□□□ -0.28
VPS33A-201ENST00000267199 ENOX2Q16206 610 aaKnown RBP13.27□□□□□ -0.28
VPS33A-201ENST00000267199 EIF4A1P60842 406 aaKnown RBP13.27□□□□□ -0.28
VPS33A-201ENST00000267199 SAMD1Q6SPF0 538 aaPredicted RBP13.27□□□□□ -0.28
VPS33A-201ENST00000267199 SRRTQ9BXP5 876 aaKnown RBP13.27□□□□□ -0.28
VPS33A-201ENST00000267199 UNC13BO14795 1591 aa13.27□□□□□ -0.29
VPS33A-201ENST00000267199 METP08581 1390 aa13.27□□□□□ -0.29
VPS33A-201ENST00000267199 KCNQ3O43525 872 aa13.27□□□□□ -0.29
VPS33A-201ENST00000267199 RANBP6O60518 1105 aaKnown RBP13.27□□□□□ -0.29
VPS33A-201ENST00000267199 EVCP57679 992 aa13.27□□□□□ -0.29
VPS33A-201ENST00000267199 SSRP1Q08945 709 aaKnown RBP13.27□□□□□ -0.29
VPS33A-201ENST00000267199 DHX32Q7L7V1 743 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms