RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ATP10BO94823 1461 aa21.87■■□□□ 1.09
UPF1-201ENST00000262803 EIF4A2Q14240 407 aaKnown RBP21.87■■□□□ 1.09
UPF1-201ENST00000262803 RAPGEF6Q8TEU7 1601 aa21.87■■□□□ 1.09
UPF1-201ENST00000262803 TSPY3P0CV98 308 aa21.87■■□□□ 1.09
UPF1-201ENST00000262803 TSPY8P0CW00 308 aa21.87■■□□□ 1.09
UPF1-201ENST00000262803 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.87■■□□□ 1.09
UPF1-201ENST00000262803 SNW1Q13573 536 aaKnown RBP21.87■■□□□ 1.09
UPF1-201ENST00000262803 EYA3Q99504 573 aa21.87■■□□□ 1.09
UPF1-201ENST00000262803 SLC26A6Q9BXS9 759 aa21.87■■□□□ 1.09
UPF1-201ENST00000262803 KLF18A0A0U1RQI7 1052 aa21.87■■□□□ 1.09
UPF1-201ENST00000262803 SMC5Q8IY18 1101 aa21.87■■□□□ 1.09
UPF1-201ENST00000262803 TSPYL6Q8N831 410 aa21.87■■□□□ 1.09
UPF1-201ENST00000262803 SREK1Q8WXA9 508 aaKnown RBP21.87■■□□□ 1.09
UPF1-201ENST00000262803 LRRC2Q9BYS8 371 aa21.87■■□□□ 1.09
UPF1-201ENST00000262803 PPM1EQ8WY54 764 aa21.86■■□□□ 1.09
UPF1-201ENST00000262803 CTNNBL1Q8WYA6 563 aaPredicted RBP21.86■■□□□ 1.09
UPF1-201ENST00000262803 TMX1Q9H3N1 280 aa21.86■■□□□ 1.09
UPF1-201ENST00000262803 ZBTB40Q9NUA8 1239 aa21.86■■□□□ 1.09
UPF1-201ENST00000262803 FMNL3Q8IVF7 1028 aa21.86■■□□□ 1.09
UPF1-201ENST00000262803 PIK3C2GO75747 1445 aa21.86■■□□□ 1.09
UPF1-201ENST00000262803 KCNG4Q8TDN1 519 aa21.86■■□□□ 1.09
UPF1-201ENST00000262803 ANKRD2Q9GZV1 360 aa21.86■■□□□ 1.09
UPF1-201ENST00000262803 IDEP14735 1019 aa21.86■■□□□ 1.09
UPF1-201ENST00000262803 ATP2B3Q16720 1220 aa21.86■■□□□ 1.09
UPF1-201ENST00000262803 XAGE3Q8WTP9 111 aa21.86■■□□□ 1.09
UPF1-201ENST00000262803 SAMM50Q9Y512 469 aa21.86■■□□□ 1.09
UPF1-201ENST00000262803 PLCH2O75038 1416 aa21.85■■□□□ 1.09
UPF1-201ENST00000262803 GRM8O00222 908 aa21.85■■□□□ 1.09
UPF1-201ENST00000262803 PPIP5K1Q6PFW1 1433 aa21.85■■□□□ 1.09
UPF1-201ENST00000262803 GRIPAP1Q4V328 841 aa21.85■■□□□ 1.09
UPF1-201ENST00000262803 TCERG1LQ5VWI1 586 aa21.85■■□□□ 1.09
UPF1-201ENST00000262803 CDCA7Q9BWT1 371 aaPredicted RBP21.85■■□□□ 1.09
UPF1-201ENST00000262803 KRT13P13646 458 aa21.85■■□□□ 1.09
UPF1-201ENST00000262803 PRC1O43663 620 aa21.85■■□□□ 1.09
UPF1-201ENST00000262803 PRIMPOLQ96LW4 560 aa21.85■■□□□ 1.09
UPF1-201ENST00000262803 NUP153P49790 1475 aaKnown RBP21.85■■□□□ 1.09
UPF1-201ENST00000262803 COPS6Q7L5N1 327 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 TUBB4AP04350 444 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 IBSPP21815 317 aaPredicted RBP21.84■■□□□ 1.09
UPF1-201ENST00000262803 CALML3P27482 149 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 CLCN1P35523 988 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 CEP85Q6P2H3 762 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 CARD14Q9BXL6 1004 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 FSD2A1L4K1 749 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 APBB1IPQ7Z5R6 666 aaPredicted RBP21.84■■□□□ 1.09
UPF1-201ENST00000262803 ZBTB43O43298 467 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 F13A1P00488 732 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 POLD1P28340 1107 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 CHMP4BP1P59074 171 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 KSR2Q6VAB6 950 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 FAM200AQ8TCP9 573 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 BICD1Q96G01 975 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 SSX2IPQ9Y2D8 614 aa21.84■■□□□ 1.09
UPF1-201ENST00000262803 NCBP1Q09161 790 aaKnown RBP21.83■■□□□ 1.09
UPF1-201ENST00000262803 ZRANB1Q9UGI0 708 aa21.83■■□□□ 1.09
UPF1-201ENST00000262803 DYNC1I1O14576 645 aa21.83■■□□□ 1.09
UPF1-201ENST00000262803 SYKP43405 635 aa21.83■■□□□ 1.09
UPF1-201ENST00000262803 CKAP4Q07065 602 aaKnown RBP21.83■■□□□ 1.09
UPF1-201ENST00000262803 IFIT1BQ5T764 474 aaKnown RBP21.83■■□□□ 1.09
UPF1-201ENST00000262803 ZNF830Q96NB3 372 aaPredicted RBP21.83■■□□□ 1.09
UPF1-201ENST00000262803 RAB3GAP1Q15042 981 aa21.83■■□□□ 1.08
UPF1-201ENST00000262803 ANO6Q4KMQ2 910 aa21.83■■□□□ 1.08
UPF1-201ENST00000262803 DNA2P51530 1060 aa21.82■■□□□ 1.08
UPF1-201ENST00000262803 POLR3GO15318 223 aaPredicted RBP21.82■■□□□ 1.08
UPF1-201ENST00000262803 CEP135Q66GS9 1140 aa21.82■■□□□ 1.08
UPF1-201ENST00000262803 DACT1Q9NYF0 836 aa21.82■■□□□ 1.08
UPF1-201ENST00000262803 PER1O15534 1290 aaPredicted RBP21.82■■□□□ 1.08
UPF1-201ENST00000262803 SEC24BO95487 1268 aa21.82■■□□□ 1.08
UPF1-201ENST00000262803 DNM1Q05193 864 aaKnown RBP21.82■■□□□ 1.08
UPF1-201ENST00000262803 CHRNA2Q15822 529 aa21.82■■□□□ 1.08
UPF1-201ENST00000262803 NBPF14Q5TI25 921 aa21.82■■□□□ 1.08
UPF1-201ENST00000262803 SYCP2Q9BX26 1530 aa21.82■■□□□ 1.08
UPF1-201ENST00000262803 FERP16591 822 aa21.82■■□□□ 1.08
UPF1-201ENST00000262803 CYP7A1P22680 504 aa21.82■■□□□ 1.08
UPF1-201ENST00000262803 MCMDC2Q4G0Z9 681 aa21.82■■□□□ 1.08
UPF1-201ENST00000262803 MTHFSDQ2M296 383 aaKnown RBP21.82■■□□□ 1.08
UPF1-201ENST00000262803 C6orf50Q9HD87 102 aa21.82■■□□□ 1.08
UPF1-201ENST00000262803 RTN1Q16799 776 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 NAA16Q6N069 864 aaPredicted RBP21.81■■□□□ 1.08
UPF1-201ENST00000262803 PLCD4Q9BRC7 762 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 ZNF518AQ6AHZ1 1483 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 TRPM2O94759 1503 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 ITSN2Q9NZM3 1697 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 ATP6V1AP38606 617 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 LMBR1LQ6UX01 489 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 COMMD10Q9Y6G5 202 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 TTC41PQ6P2S7 1318 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 TPTE2Q6XPS3 522 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 CCDC113Q9H0I3 377 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 SH2D4AQ9H788 454 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 HOMER2Q9NSB8 354 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 PAXBP1Q9Y5B6 917 aa21.81■■□□□ 1.08
UPF1-201ENST00000262803 ZFYVE9O95405 1425 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 KRT24Q2M2I5 525 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 PLEKHM2Q8IWE5 1019 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 EIF2AK4Q9P2K8 1649 aaKnown RBP21.8■■□□□ 1.08
UPF1-201ENST00000262803 CYLC1P35663 651 aaPredicted RBP21.8■■□□□ 1.08
UPF1-201ENST00000262803 DDB1Q16531 1140 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 Q6ZUG5 572 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 MSANTD4Q8NCY6 345 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms