RNA–Protein interactions for RNA: ENST00000255465.6

CCNA1-201, Transcript of cyclin A1, humanhuman

TSL 1 (best) BASIC

Gene CCNA1, Length 1,879 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1-201ENST00000255465 NBPF3Q9H094 633 aa13.97□□□□□ -0.17
CCNA1-201ENST00000255465 STK32BQ9NY57 414 aa13.97□□□□□ -0.17
CCNA1-201ENST00000255465 TMEM63CQ9P1W3 806 aa13.97□□□□□ -0.17
CCNA1-201ENST00000255465 RRP7AQ9Y3A4 280 aaKnown RBP13.97□□□□□ -0.17
CCNA1-201ENST00000255465 C4BP0C0L5 1744 aa13.96□□□□□ -0.17
CCNA1-201ENST00000255465 PTCD1O75127 700 aaKnown RBP13.96□□□□□ -0.17
CCNA1-201ENST00000255465 SLC4A9Q96Q91 983 aa13.96□□□□□ -0.17
CCNA1-201ENST00000255465 RRP15Q9Y3B9 282 aaKnown RBP13.96□□□□□ -0.17
CCNA1-201ENST00000255465 TJP1Q07157 1748 aa13.96□□□□□ -0.18
CCNA1-201ENST00000255465 MAP2K2P36507 400 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 NEUROD2Q15784 382 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 ZNF827Q17R98 1081 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 KMT5BQ4FZB7 885 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 ANKRD20A12PQ8NF67 263 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 AKT1S1Q96B36 256 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 TRERF1Q96PN7 1200 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 CICQ96RK0 1608 aaPredicted RBP13.95□□□□□ -0.18
CCNA1-201ENST00000255465 KCPQ6ZWJ8 1503 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 MYH14Q7Z406 1995 aaKnown RBP13.95□□□□□ -0.18
CCNA1-201ENST00000255465 SENP3-EIF4A1A0A087X0R7 540 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 ITPK1Q13572 414 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 ZSCAN26Q16670 478 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 KRBA2Q6ZNG9 492 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 AK7Q96M32 723 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 THUMPD2Q9BTF0 503 aaKnown RBP13.95□□□□□ -0.18
CCNA1-201ENST00000255465 TTC12Q9H892 705 aaPredicted RBP13.95□□□□□ -0.18
CCNA1-201ENST00000255465 UBR3Q6ZT12 1888 aa13.95□□□□□ -0.18
CCNA1-201ENST00000255465 KDM3BQ7LBC6 1761 aa13.94□□□□□ -0.18
CCNA1-201ENST00000255465 CASZ1Q86V15 1759 aa13.94□□□□□ -0.18
CCNA1-201ENST00000255465 BTBD11A6QL63 1104 aa13.94□□□□□ -0.18
CCNA1-201ENST00000255465 APAF1O14727 1248 aa13.94□□□□□ -0.18
CCNA1-201ENST00000255465 ADCY5O95622 1261 aa13.94□□□□□ -0.18
CCNA1-201ENST00000255465 HMGB2P26583 209 aaKnown RBP13.94□□□□□ -0.18
CCNA1-201ENST00000255465 TSGA10IPQ3SY00 556 aa13.94□□□□□ -0.18
CCNA1-201ENST00000255465 ZNF790Q6PG37 636 aa13.94□□□□□ -0.18
CCNA1-201ENST00000255465 MMS22LQ6ZRQ5 1243 aa13.94□□□□□ -0.18
CCNA1-201ENST00000255465 CCDC191Q8NCU4 936 aa13.94□□□□□ -0.18
CCNA1-201ENST00000255465 NEFHP12036 1026 aa13.93□□□□□ -0.18
CCNA1-201ENST00000255465 ERCC3P19447 782 aa13.93□□□□□ -0.18
CCNA1-201ENST00000255465 TAF7Q15545 349 aaPredicted RBP13.93□□□□□ -0.18
CCNA1-201ENST00000255465 LINC00116Q8NCU8 138 aa13.93□□□□□ -0.18
CCNA1-201ENST00000255465 DRC1Q96MC2 740 aa13.93□□□□□ -0.18
CCNA1-201ENST00000255465 PTPRCP08575 1304 aa13.93□□□□□ -0.18
CCNA1-201ENST00000255465 KIF2AO00139 706 aaPredicted RBP13.93□□□□□ -0.18
CCNA1-201ENST00000255465 OS9Q13438 667 aaPredicted RBP13.93□□□□□ -0.18
CCNA1-201ENST00000255465 TTC5Q8N0Z6 440 aa13.93□□□□□ -0.18
CCNA1-201ENST00000255465 TRIM35Q9UPQ4 493 aa13.93□□□□□ -0.18
CCNA1-201ENST00000255465 PRPF40AO75400 957 aaKnown RBP13.92□□□□□ -0.18
CCNA1-201ENST00000255465 USP8P40818 1118 aa13.92□□□□□ -0.18
CCNA1-201ENST00000255465 STAG1Q8WVM7 1258 aa13.92□□□□□ -0.18
CCNA1-201ENST00000255465 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.92□□□□□ -0.18
CCNA1-201ENST00000255465 LRRFIP2Q9Y608 721 aaKnown RBP13.92□□□□□ -0.18
CCNA1-201ENST00000255465 MAFGO15525 162 aa13.91□□□□□ -0.18
CCNA1-201ENST00000255465 KCNQ3O43525 872 aa13.91□□□□□ -0.18
CCNA1-201ENST00000255465 KDM4AO75164 1064 aa13.91□□□□□ -0.18
CCNA1-201ENST00000255465 RPS6KA5O75582 802 aa13.91□□□□□ -0.18
CCNA1-201ENST00000255465 KIF2CQ99661 725 aa13.91□□□□□ -0.18
CCNA1-201ENST00000255465 TFCP2L1Q9NZI6 479 aa13.91□□□□□ -0.18
CCNA1-201ENST00000255465 CTAGE5O15320 804 aa13.91□□□□□ -0.18
CCNA1-201ENST00000255465 H2AFXP16104 143 aaPredicted RBP13.91□□□□□ -0.18
CCNA1-201ENST00000255465 IRX1P78414 480 aaPredicted RBP13.91□□□□□ -0.18
CCNA1-201ENST00000255465 ZNF496Q96IT1 587 aaPredicted RBP13.91□□□□□ -0.18
CCNA1-201ENST00000255465 PDGFDQ9GZP0 370 aaPredicted RBP13.91□□□□□ -0.18
CCNA1-201ENST00000255465 TMX1Q9H3N1 280 aa13.91□□□□□ -0.18
CCNA1-201ENST00000255465 MIS18AQ9NYP9 233 aa13.91□□□□□ -0.18
CCNA1-201ENST00000255465 MRVI1Q9Y6F6 885 aa13.91□□□□□ -0.18
CCNA1-201ENST00000255465 ANKRD33BA6NCL7 494 aa13.9□□□□□ -0.18
CCNA1-201ENST00000255465 HDAC1Q13547 482 aaPredicted RBP13.9□□□□□ -0.18
CCNA1-201ENST00000255465 EXOC4Q96A65 974 aa13.9□□□□□ -0.18
CCNA1-201ENST00000255465 TOMM22Q9NS69 142 aa13.9□□□□□ -0.18
CCNA1-201ENST00000255465 RBM27Q9P2N5 1060 aaKnown RBP13.9□□□□□ -0.18
CCNA1-201ENST00000255465 PNPLA7Q6ZV29 1317 aa13.9□□□□□ -0.18
CCNA1-201ENST00000255465 TRIM66O15016 1216 aa13.89□□□□□ -0.19
CCNA1-201ENST00000255465 C21orf2O43822 256 aa13.89□□□□□ -0.19
CCNA1-201ENST00000255465 GYS2P54840 703 aa13.89□□□□□ -0.19
CCNA1-201ENST00000255465 DNAJC10Q8IXB1 793 aa13.89□□□□□ -0.19
CCNA1-201ENST00000255465 FMNL2Q96PY5 1086 aa13.89□□□□□ -0.19
CCNA1-201ENST00000255465 FAM107BQ9H098 131 aa13.89□□□□□ -0.19
CCNA1-201ENST00000255465 HEG1Q9ULI3 1381 aa13.89□□□□□ -0.19
CCNA1-201ENST00000255465 SGSM2O43147 1006 aa13.89□□□□□ -0.19
CCNA1-201ENST00000255465 RNF214Q8ND24 703 aa13.89□□□□□ -0.19
CCNA1-201ENST00000255465 PAIP2Q9BPZ3 127 aaKnown RBP13.89□□□□□ -0.19
CCNA1-201ENST00000255465 UBXN6Q9BZV1 441 aa13.89□□□□□ -0.19
CCNA1-201ENST00000255465 ELP1O95163 1332 aa13.89□□□□□ -0.19
CCNA1-201ENST00000255465 CCDC171Q6TFL3 1326 aa13.89□□□□□ -0.19
CCNA1-201ENST00000255465 TNNT1P13805 278 aa13.88□□□□□ -0.19
CCNA1-201ENST00000255465 ZRSR1Q15695 479 aaKnown RBP13.88□□□□□ -0.19
CCNA1-201ENST00000255465 RC3H1Q5TC82 1133 aaKnown RBP13.88□□□□□ -0.19
CCNA1-201ENST00000255465 FBXO38Q6PIJ6 1188 aa13.88□□□□□ -0.19
CCNA1-201ENST00000255465 AMIGO3Q86WK7 504 aa13.88□□□□□ -0.19
CCNA1-201ENST00000255465 A1CFQ9NQ94 594 aaKnown RBP13.88□□□□□ -0.19
CCNA1-201ENST00000255465 CNTNAP4Q9C0A0 1308 aa13.88□□□□□ -0.19
CCNA1-201ENST00000255465 H0YHG0 523 aa13.87□□□□□ -0.19
CCNA1-201ENST00000255465 CRKLP46109 303 aaKnown RBP13.87□□□□□ -0.19
CCNA1-201ENST00000255465 SARNPP82979 210 aaKnown RBP13.87□□□□□ -0.19
CCNA1-201ENST00000255465 PACS2Q86VP3 889 aa13.87□□□□□ -0.19
CCNA1-201ENST00000255465 KCNF1Q9H3M0 494 aa13.87□□□□□ -0.19
CCNA1-201ENST00000255465 ARGLU1Q9NWB6 273 aaPredicted RBP13.87□□□□□ -0.19
CCNA1-201ENST00000255465 PYCARDQ9ULZ3 195 aa13.87□□□□□ -0.19
CCNA1-201ENST00000255465 FHOD1Q9Y613 1164 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms