RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SULT1A1P50225 295 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PGGT1BP53609 377 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 EBPQ15125 230 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 MEP1BQ16820 701 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 OR4F3Q6IEY1 312 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 LETMD1Q6P1Q0 360 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 STRADAQ7RTN6 431 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 FBXO16Q8IX29 292 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 BEND2Q8NDZ0 799 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 BTN2A3PQ96KV6 586 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 CNN2Q99439 309 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 FAAP24Q9BTP7 215 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 LMF2Q9BU23 707 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SLC17A5Q9NRA2 495 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 WASHC3Q9Y3C0 194 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 TMED3Q9Y3Q3 217 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PPLO60437 1756 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 TCRBV7S2A1N4TA0A589 114 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SLC22A23A1A5C7 686 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 M0QYT0 321 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 NRG2O14511 850 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 HCRTR1O43613 425 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 CYBBP04839 570 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ST6GAL1P15907 406 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 RAB5AP20339 215 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ISXQ2M1V0 245 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ENPP6Q6UWR7 440 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 UBALD2Q8IYN6 164 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF34Q8IZ26 560 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 OR2T35Q8NGX2 323 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 CYP2W1Q8TAV3 490 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 VSTM2LQ96N03 204 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 HSD17B14Q9BPX1 270 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 HHLA2Q9UM44 414 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 A0A1W2PQ27 194 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 A0A1W2PQ64 194 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 A0A1W2PQC6 194 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 A0A1W2PQD8 194 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 LINC00862A6NCI5 91 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 SDR42E2A6NKP2 422 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 SLC1A7O00341 560 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 LIASO43766 372 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CLDN9O95484 217 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 VIPP01282 170 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 APLNRP35414 380 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 PRICKLE4Q2TBC4 344 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM196Q5HYL7 178 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 NSUN5P2Q63ZY6 315 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CHSY1Q86X52 802 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF761Q86XN6 746 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 PROKR1Q8TCW9 393 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 C7orf43Q8WVR3 580 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 WDR34Q96EX3 536 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CLSTN3Q9BQT9 956 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 MSL2Q9HCI7 577 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 SYNJ2O15056 1496 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF99A8MXY4 864 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 DHRS3O75911 302 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 INSRRP14616 1297 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 AQP6Q13520 282 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 C5orf64Q2M2E5 130 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 LRRC75BQ2VPJ9 315 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CRB2Q5IJ48 1285 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 HIST2H2BCQ6DN03 193 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 HIST2H2BDQ6DRA6 164 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 GPR119Q8TDV5 335 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 NUDCD2Q8WVJ2 157 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 NICN1Q9BSH3 213 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 AK3Q9UIJ7 227 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 AJAP1Q9UKB5 411 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 B4DGG1 531 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 SEMA7AO75326 666 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 MT-ND6P03923 174 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 IQCF3P0C7M6 154 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CD44P16070 742 aaKnown RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FGF9P31371 208 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 AVPR1AP37288 418 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 PBX2P40425 430 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FLT3LGP49771 235 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CHRDL2Q6WN34 429 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 NECAP1Q8NC96 275 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 OR10AD1Q8NGE0 317 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 OR1P1Q8NH06 330 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 RARRES2Q99969 163 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FAM110AQ9BQ89 295 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FAM234AQ9H0X4 552 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 CHST8Q9H2A9 424 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 NECAP2Q9NVZ3 263 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 FRRS1LQ9P0K9 344 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 PIM2Q9P1W9 311 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 SLC35A3Q9Y2D2 325 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 VPS8Q8N3P4 1428 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 IGHV2-70P01814 119 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 PSG1P11464 419 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF44P15621 663 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 AQP5P55064 265 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 RPS13P62277 151 aaKnown RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 DCAF12L2Q5VW00 463 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 GLB1LQ6UWU2 654 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ZFP62Q8NB50 900 aaPredicted RBP3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms