RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 NANSQ9NR45 359 aa13.86□□□□□ -0.19
CLN3-264ENST00000637985 FGFR1OP2Q9NVK5 253 aa13.86□□□□□ -0.19
CLN3-264ENST00000637985 SLC7A7Q9UM01 511 aa13.86□□□□□ -0.19
CLN3-264ENST00000637985 WIPI2Q9Y4P8 454 aa13.86□□□□□ -0.19
CLN3-264ENST00000637985 FXYD1O00168 92 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 MRASO14807 208 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 CRYBB2P43320 205 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 RAD52P43351 418 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 CRYBA2P53672 197 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 LCN2P80188 198 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 CAMK2DQ13557 499 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 FXNQ16595 210 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 ARMCX4Q5H9R4 360 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 RABL3Q5HYI8 236 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 ASPHD2Q6ICH7 369 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 C16orf87Q6PH81 154 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 SPATC1Q76KD6 591 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 KIR3DL3Q8N743 410 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 PCYOX1LQ8NBM8 494 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 OR6N1Q8NGY5 312 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 UBE2FQ969M7 185 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 ULBP2Q9BZM5 246 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 POLR2J2Q9GZM3 115 aaKnown RBP13.85□□□□□ -0.19
CLN3-264ENST00000637985 POLR2J3Q9H1A7 115 aaKnown RBP13.85□□□□□ -0.19
CLN3-264ENST00000637985 GID8Q9NWU2 228 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 B3GNT2Q9NY97 397 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 ZNF229Q9UJW7 825 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 BAG5Q9UL15 447 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 ZNF346Q9UL40 294 aaKnown RBP13.85□□□□□ -0.19
CLN3-264ENST00000637985 FZR1Q9UM11 496 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 POFUT2Q9Y2G5 429 aa13.85□□□□□ -0.19
CLN3-264ENST00000637985 CH25HO95992 272 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 IFNA14P01570 189 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 HIST1H2ABP04908 130 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 CAPZA2P47755 286 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 ZNF362Q5T0B9 420 aaPredicted RBP13.84□□□□□ -0.19
CLN3-264ENST00000637985 CGB2Q6NT52 195 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 BRICD5Q6PL45 260 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 ZNF813Q6ZN06 617 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 Q6ZPA2 131 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 HIST3H2AQ7L7L0 130 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 TSPYL5Q86VY4 417 aaPredicted RBP13.84□□□□□ -0.19
CLN3-264ENST00000637985 OR6X1Q8NH79 312 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 HIST1H2ACQ93077 130 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 MS4A3Q96HJ5 214 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 ZNF75AQ96N20 296 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 DENND2DQ9H6A0 471 aaPredicted RBP13.84□□□□□ -0.19
CLN3-264ENST00000637985 CCDC134Q9H6E4 229 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 BEX1Q9HBH7 125 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.84□□□□□ -0.19
CLN3-264ENST00000637985 TAS2R5Q9NYW4 299 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 DUSP13Q9UII6 198 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 SH3GLB1Q9Y371 365 aa13.84□□□□□ -0.19
CLN3-264ENST00000637985 A0A1W2PPW3 197 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 C17orf100A8MU93 164 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 C11orf98E9PRG8 122 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 SLC22A2O15244 555 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 SERPINI2O75830 405 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 IGF2P01344 180 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 ASAH2BP0C7U1 165 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 CSNK1A1P48729 337 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 BIDP55957 195 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 RPS23P62266 143 aaKnown RBP13.83□□□□□ -0.2
CLN3-264ENST00000637985 CCL8P80075 99 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 GSG1Q2KHT4 349 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 SLC35D2Q76EJ3 337 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 C10orf82Q8WW14 230 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 TMEM54Q969K7 222 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 ZNF583Q96ND8 569 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 FOXB1Q99853 325 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 PRSS27Q9BQR3 290 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 ZNF446Q9NWS9 450 aa13.83□□□□□ -0.2
CLN3-264ENST00000637985 IGHV1-69-2A0A0G2JMI3 117 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 LOC100653049A0A140TA62 436 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 CLDN25C9JDP6 229 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 KPNA4O00629 521 aaPredicted RBP13.82□□□□□ -0.2
CLN3-264ENST00000637985 PIN1P1O15428 100 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 RNF13O43567 381 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 ENTPD5O75356 428 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 KRT34O76011 436 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 SEC14L2O76054 403 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 OR5F1O95221 314 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 HLA-HP01893 362 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 CD79AP11912 226 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 ZNF14P17017 642 aaPredicted RBP13.82□□□□□ -0.2
CLN3-264ENST00000637985 RBM34P42696 430 aaKnown RBP13.82□□□□□ -0.2
CLN3-264ENST00000637985 TAS2R41P59536 307 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 TEKQ02763 1124 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 PCGF3Q3KNV8 242 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 GKAP1Q5VSY0 366 aaPredicted RBP13.82□□□□□ -0.2
CLN3-264ENST00000637985 OLFML2AQ68BL7 652 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 PIWIL3Q7Z3Z3 882 aaKnown RBP13.82□□□□□ -0.2
CLN3-264ENST00000637985 OR4F5Q8NH21 305 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 SLC25A44Q96H78 314 aaPredicted RBP13.82□□□□□ -0.2
CLN3-264ENST00000637985 MMP26Q9NRE1 261 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 NKIRAS2Q9NYR9 191 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 GLTPQ9NZD2 209 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 PURGQ9UJV8 347 aaKnown RBP13.82□□□□□ -0.2
CLN3-264ENST00000637985 FBXL3Q9UKT7 428 aa13.82□□□□□ -0.2
CLN3-264ENST00000637985 AP3M1Q9Y2T2 418 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms