RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ZNF718Q3SXZ3 478 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 PABPC1L2AQ5JQF8 200 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 TMEM255AQ5JRV8 349 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 BLOC1S3Q6QNY0 202 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 SYT14Q8NB59 555 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 OR6T1Q8NGN1 323 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 ST7LQ8TDW4 575 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 C7orf26Q96N11 449 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 ARHGDIGQ99819 225 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 ZNF229Q9UJW7 825 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 PLSCR5A0PG75 271 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 EVPLLA8MZ36 301 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 BLOC1S5-TXNDC5H3BN57 136 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 UBOX5O94941 541 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 LYPD3O95274 346 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 OPN1SWP03999 348 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 GPX2P18283 190 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 ZFP36P26651 326 aaKnown RBP16.43■□□□□ 0.22
CLN3-262ENST00000637699 STOMP27105 288 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 MMP15P51511 669 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 DEFA6Q01524 100 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 HNRNPA0Q13151 305 aaKnown RBP16.43■□□□□ 0.22
CLN3-262ENST00000637699 NPTX1Q15818 432 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 HIST3H3Q16695 136 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 NRN1LQ496H8 165 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 RBM45Q8IUH3 476 aaKnown RBP16.43■□□□□ 0.22
CLN3-262ENST00000637699 ZNF101Q8IZC7 436 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 VANGL1Q8TAA9 524 aaPredicted RBP16.43■□□□□ 0.22
CLN3-262ENST00000637699 LRRC8CQ8TDW0 803 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 ADAMTS16Q8TE57 1224 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 IPCEF1Q8WWN9 437 aaPredicted RBP16.43■□□□□ 0.22
CLN3-262ENST00000637699 LRRC58Q96CX6 371 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 KCNN2Q9H2S1 579 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 LEF1Q9UJU2 399 aaPredicted RBP16.43■□□□□ 0.22
CLN3-262ENST00000637699 SLC7A7Q9UM01 511 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 ANGPT4Q9Y264 503 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 GMEB1Q9Y692 573 aa16.43■□□□□ 0.22
CLN3-262ENST00000637699 TRBV5-3A0A0A0MS03 114 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 ZSCAN5BA6NJL1 495 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 F13BP05160 661 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 ASAH2BP0C7U1 165 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 H2AFXP16104 143 aaPredicted RBP16.42■□□□□ 0.22
CLN3-262ENST00000637699 PRTN3P24158 256 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 CDAP32320 146 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 WNT5AP41221 380 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 IDH3AP50213 366 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 SLC3A1Q07837 685 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 PDLIM3Q53GG5 364 aaPredicted RBP16.42■□□□□ 0.22
CLN3-262ENST00000637699 ARMCX4Q5H9R4 360 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 HDXQ7Z353 690 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 NANOGNBQ7Z5D8 188 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 GPR32P1Q8NGA4 272 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 OR4D11Q8NGI4 311 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 SLC25A40Q8TBP6 338 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 GEMIN6Q8WXD5 167 aaKnown RBP16.42■□□□□ 0.22
CLN3-262ENST00000637699 MARS2Q96GW9 593 aaKnown RBP16.42■□□□□ 0.22
CLN3-262ENST00000637699 EBF4Q9BQW3 602 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 EGLN1Q9GZT9 426 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 CCNB1IP1Q9NPC3 277 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 MMP26Q9NRE1 261 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 EIF3KQ9UBQ5 218 aaKnown RBP16.42■□□□□ 0.22
CLN3-262ENST00000637699 ZNF69Q9UC07 566 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 CORO2BQ9UQ03 480 aa16.42■□□□□ 0.22
CLN3-262ENST00000637699 C5orf49A4QMS7 147 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 DNAJC9-AS1A6NH13 148 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 MCIDASD6RGH6 385 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 M0QX08 132 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 POLR3GO15318 223 aaPredicted RBP16.41■□□□□ 0.22
CLN3-262ENST00000637699 FOXH1O75593 365 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 TGDSO95455 350 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 SBK2P0C263 348 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 MRPL19P49406 292 aaKnown RBP16.41■□□□□ 0.22
CLN3-262ENST00000637699 ATP4BP51164 291 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 SPRNQ5BIV9 151 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 TREML4Q6UXN2 200 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 DOK3Q7L591 496 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 TSPYL5Q86VY4 417 aaPredicted RBP16.41■□□□□ 0.22
CLN3-262ENST00000637699 BCL6BQ8N143 479 aaPredicted RBP16.41■□□□□ 0.22
CLN3-262ENST00000637699 DEFB108BQ8NET1 73 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 NOXO1Q8NFA2 376 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 AKR7LQ8NHP1 331 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 POM121L2Q96KW2 1035 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 DCLRE1CQ96SD1 692 aaKnown RBP16.41■□□□□ 0.22
CLN3-262ENST00000637699 MRPL13Q9BYD1 178 aaKnown RBP16.41■□□□□ 0.22
CLN3-262ENST00000637699 OR2J1Q9GZK6 312 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 UNKLQ9H9P5 680 aaKnown RBP16.41■□□□□ 0.22
CLN3-262ENST00000637699 SIAEQ9HAT2 523 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 DCAF16Q9NXF7 216 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 NUP50Q9UKX7 468 aa16.41■□□□□ 0.22
CLN3-262ENST00000637699 LOC100509620A0A075B734 347 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 PPIAL4EA0A075B759 164 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 PPIAL4CA0A0B4J2A2 164 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 A0A1W2PRG6 482 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 TRAPPC13A5PLN9 417 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 PPIAL4DF5H284 164 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 TRMUO75648 421 aaKnown RBP16.4■□□□□ 0.22
CLN3-262ENST00000637699 SLC2A10O95528 541 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 PPIAL4FP0DN26 164 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 ACADSP16219 412 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 ZNF32P17041 273 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms