RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ENPP5Q9UJA9 477 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 GRIP1Q9Y3R0 1128 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 SVILO95425 2214 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 A0A087WV48 116 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 SYNGR4O95473 234 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 WNT11O96014 354 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 GAAP10253 952 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 ACTC1P68032 377 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 ACTA1P68133 377 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 ADAM8P78325 824 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 P2RY8Q86VZ1 359 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 ANKRD13BQ86YJ7 626 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 TUSC5Q8IXB3 177 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 PHC2Q8IXK0 858 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 OR6N1Q8NGY5 312 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 TMEM203Q969S6 136 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 INPP5EQ9NRR6 644 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 CACNA1CQ13936 2221 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 A0A1W2PPL8 197 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 UPK3AO75631 287 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 SPARCP09486 303 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 CSNK1A1P48729 337 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 HSF2Q03933 536 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 MLLT11Q13015 90 aaPredicted RBP17.81■□□□□ 0.44
CLN3-250ENST00000636839 TMPRSS11AQ6ZMR5 421 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 SPATC1Q76KD6 591 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 LINC00346Q8IVM7 164 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 THEM6Q8WUY1 208 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 C11orf40Q8WZ69 217 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 TMEM54Q969K7 222 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 PRRG4Q9BZD6 226 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 SEC61A2Q9H9S3 476 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 BABAM2Q9NXR7 383 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 MCTS1Q9ULC4 181 aaKnown RBP17.81■□□□□ 0.44
CLN3-250ENST00000636839 PCDHGB7Q9Y5F8 929 aa17.81■□□□□ 0.44
CLN3-250ENST00000636839 A0A1B0GVC2 190 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 AHCYL1O43865 530 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 ALOX5APP20292 161 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 TMBIM6P55061 237 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 UCNP55089 124 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 CORO6Q6QEF8 472 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 CHMP1BQ7LBR1 199 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 AAED1Q7RTV5 226 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 GLB1L2Q8IW92 636 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 SNX33Q8WV41 574 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 DOK1Q99704 481 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 CALHM2Q9HA72 323 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 EMC7Q9NPA0 242 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 FOXD3Q9UJU5 478 aaPredicted RBP17.8■□□□□ 0.44
CLN3-250ENST00000636839 GNG8Q9UK08 70 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 UGT2A1Q9Y4X1 527 aa17.8■□□□□ 0.44
CLN3-250ENST00000636839 MAP1BP46821 2468 aaKnown RBP17.79■□□□□ 0.44
CLN3-250ENST00000636839 CCRL2O00421 344 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 IGHV3-9P01782 118 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 PSMB10P40306 273 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 VBP1P61758 197 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 NCS1P62166 190 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 ZNF684Q5T5D7 378 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 DNM1P34Q6PK57 102 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 LINGO2Q7L985 606 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 FGD2Q7Z6J4 655 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 C20orf196Q8IYI0 205 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 ZCCHC14Q8WYQ9 949 aaKnown RBP17.79■□□□□ 0.44
CLN3-250ENST00000636839 TRMT61AQ96FX7 289 aaKnown RBP17.79■□□□□ 0.44
CLN3-250ENST00000636839 PLSCR2Q9NRY7 297 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 ACOXLQ9NUZ1 547 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 LAMP5Q9UJQ1 280 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 OR8G3PP0DMU2 310 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 CELP19835 753 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 LAP3P28838 519 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 SPCS2Q15005 226 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 CDONQ4KMG0 1287 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 C19orf48Q6RUI8 117 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 VASH1Q7L8A9 365 aaPredicted RBP17.79■□□□□ 0.44
CLN3-250ENST00000636839 HDDC2Q7Z4H3 204 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 Q8NA96 180 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 OTOSQ8NHW6 89 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 ZNF420Q8TAQ5 688 aaPredicted RBP17.79■□□□□ 0.44
CLN3-250ENST00000636839 SNRNP27Q8WVK2 155 aaKnown RBP17.79■□□□□ 0.44
CLN3-250ENST00000636839 PELI1Q96FA3 418 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 TM9SF2Q99805 663 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 CHCHD6Q9BRQ6 235 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 YIPF3Q9GZM5 350 aa17.79■□□□□ 0.44
CLN3-250ENST00000636839 MRM2Q9UI43 246 aaKnown RBP17.79■□□□□ 0.44
CLN3-250ENST00000636839 LOC100506127A0A0U1RQW1 187 aa17.78■□□□□ 0.44
CLN3-250ENST00000636839 A0A1W2PPW3 197 aa17.78■□□□□ 0.44
CLN3-250ENST00000636839 ZNF670-ZNF695F2Z2N8 137 aa17.78■□□□□ 0.44
CLN3-250ENST00000636839 AQP7O14520 342 aa17.78■□□□□ 0.44
CLN3-250ENST00000636839 GPX5O75715 221 aa17.78■□□□□ 0.44
CLN3-250ENST00000636839 GABARAPO95166 117 aa17.78■□□□□ 0.44
CLN3-250ENST00000636839 MT-ND5P03915 603 aa17.78■□□□□ 0.44
CLN3-250ENST00000636839 CPEP16870 476 aa17.78■□□□□ 0.44
CLN3-250ENST00000636839 ENTPD1P49961 510 aa17.78■□□□□ 0.44
CLN3-250ENST00000636839 RPS25P62851 125 aaKnown RBP17.78■□□□□ 0.44
CLN3-250ENST00000636839 RNF166Q96A37 237 aaPredicted RBP17.78■□□□□ 0.44
CLN3-250ENST00000636839 CENPOQ9BU64 300 aa17.78■□□□□ 0.44
CLN3-250ENST00000636839 PRDM14Q9GZV8 571 aa17.78■□□□□ 0.44
CLN3-250ENST00000636839 IGKV3D-15A0A087WSY6 115 aa17.77■□□□□ 0.44
CLN3-250ENST00000636839 TPBGQ13641 420 aa17.77■□□□□ 0.44
CLN3-250ENST00000636839 INSL4Q14641 139 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms