RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 K7EIL1 84 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 SHOX2O60902 331 aaPredicted RBP12.08□□□□□ -0.48
CLN3-249ENST00000636685 PUDPQ08623 228 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 CDK5R2Q13319 367 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 SLC36A2Q495M3 483 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 FOXB2Q5VYV0 432 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 SLC27A4Q6P1M0 643 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 RFPL4BQ6ZWI9 263 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 LRRC34Q8IZ02 419 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 ITLN1Q8WWA0 313 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 TUBGCP3Q96CW5 907 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 SAMD8Q96LT4 415 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 CDADC1Q9BWV3 514 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 PARD6BQ9BYG5 372 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 TMEM165Q9HC07 324 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 ACOXLQ9NUZ1 547 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 PPP1R3CQ9UQK1 317 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 TENM2Q9NT68 2774 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 DNAH1Q9P2D7 4330 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 ENTPD5O75356 428 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 TSPAN9O75954 239 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 BGLAPP02818 100 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 MMP7P09237 267 aaPredicted RBP12.07□□□□□ -0.48
CLN3-249ENST00000636685 TNFRSF1AP19438 455 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 AHCYP23526 432 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 HSF2Q03933 536 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 CASP8Q14790 479 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 PCLAFQ15004 111 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 ZMAT1Q5H9K5 638 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 MTX3Q5HYI7 312 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 PABPC1L2AQ5JQF8 200 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 ANXA8L1Q5VT79 327 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 C8orf74Q6P047 294 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 DPPA2Q7Z7J5 298 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 OR2Z1Q8NG97 314 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 GATAD2BQ8WXI9 593 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 NEIL1Q96FI4 390 aaPredicted RBP12.07□□□□□ -0.48
CLN3-249ENST00000636685 PLEKHA8Q96JA3 519 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 FMO2Q99518 471 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 SLC19A3Q9BZV2 496 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 FAM53CQ9NYF3 392 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 RPS6KB2Q9UBS0 482 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 CGGBP1Q9UFW8 167 aaPredicted RBP12.07□□□□□ -0.48
CLN3-249ENST00000636685 MIOXQ9UGB7 285 aa12.07□□□□□ -0.48
CLN3-249ENST00000636685 A0A0U1RQK1 487 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 C5orf49A4QMS7 147 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 LRRN3E7EW58 273 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 XPNPEP2O43895 674 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 TIMM8AO60220 97 aaPredicted RBP12.06□□□□□ -0.48
CLN3-249ENST00000636685 STOMP27105 288 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 CRHR1P34998 444 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 CFHR2P36980 270 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 PPP1CBP62140 327 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 COL10A1Q03692 680 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 EMX2Q04743 252 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 RPS26P11Q5JNZ5 115 aaPredicted RBP12.06□□□□□ -0.48
CLN3-249ENST00000636685 C5orf46Q6UWT4 87 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 PXKQ7Z7A4 578 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 LDLRAD3Q86YD5 345 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 LYG1Q8N1E2 194 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 LRRC18Q8N456 261 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 SCAIQ8N9R8 606 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 HIPK4Q8NE63 616 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 ABHD4Q8TB40 342 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 IFT81Q8WYA0 676 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 POM121L2Q96KW2 1035 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 MOGAT1Q96PD6 335 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 TBX15Q96SF7 602 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 TMEM246Q9BRR3 403 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 SPATA9Q9BWV2 254 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 ASPNQ9BXN1 380 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 TSPYL1Q9H0U9 437 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 A4GALTQ9NPC4 353 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 PSMC3IPQ9P2W1 217 aaPredicted RBP12.06□□□□□ -0.48
CLN3-249ENST00000636685 EIF3KQ9UBQ5 218 aaKnown RBP12.06□□□□□ -0.48
CLN3-249ENST00000636685 RAB21Q9UL25 225 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 FOXJ3Q9UPW0 622 aa12.06□□□□□ -0.48
CLN3-249ENST00000636685 LOC100509620A0A075B734 347 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 A0A1B0GWA3 101 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 CCDC154A6NI56 674 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 C22orf46C9J442 243 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 C11orf98E9PRG8 122 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 P2RY10O00398 339 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 PLPP3O14495 311 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 TRIM13O60858 407 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 ABHD2P08910 425 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 TNFSF4P23510 183 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 CPT2P23786 658 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 ECHS1P30084 290 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 CCT5P48643 541 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 PITPNBP48739 271 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 ANXA11P50995 505 aaKnown RBP12.05□□□□□ -0.48
CLN3-249ENST00000636685 MMP16P51512 607 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 RUNDC3AQ59EK9 446 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 DEFB121Q5J5C9 76 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 SPANXN4Q5MJ08 99 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 Q6ZR03 302 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 OR8B3Q8NGG8 313 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 OR8B2Q96RD0 313 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 TRIM15Q9C019 465 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms