RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ZNHIT1O43257 154 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 GABARAPO95166 117 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 QDPRP09417 244 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 CPEP16870 476 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 ALOX5APP20292 161 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 OR12D2P58182 307 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 TPBGQ13641 420 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 TMPRSS11AQ6ZMR5 421 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 ADGRE4PQ86SQ3 457 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 PHC2Q8IXK0 858 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 C20orf196Q8IYI0 205 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 OR6N2Q8NGY6 317 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 FNDC8Q8TC99 324 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 C4orf36Q96KX1 117 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 KLHL9Q9P2J3 617 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 MCTS1Q9ULC4 181 aaKnown RBP12.64□□□□□ -0.39
USP39-220ENST00000613444 UGT2A1Q9Y4X1 527 aa12.64□□□□□ -0.39
USP39-220ENST00000613444 CCRL2O00421 344 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 ZNF593O00488 134 aaPredicted RBP12.63□□□□□ -0.39
USP39-220ENST00000613444 SYNGR4O95473 234 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 HLA-DQA2P01906 255 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 HRGP04196 525 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 NR4A1P22736 598 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 CSNK1A1P48729 337 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 C10orf128Q5T292 105 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 P2RY8Q86VZ1 359 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 GLB1L2Q8IW92 636 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 SYS1Q8N2H4 156 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 OTOSQ8NHW6 89 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 RAB2BQ8WUD1 216 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 RPL3LQ92901 407 aaKnown RBP12.63□□□□□ -0.39
USP39-220ENST00000613444 TMEM45BQ96B21 275 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 AMELYQ99218 206 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 BCO1Q9HAY6 547 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 BABAM2Q9NXR7 383 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 LUZP4Q9P127 313 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 KCNG2Q9UJ96 466 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 CAMK2AQ9UQM7 478 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 DOCK7Q96N67 2140 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 MED19A0JLT2 244 aaPredicted RBP12.63□□□□□ -0.39
USP39-220ENST00000613444 E9PI62 339 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 GADD45AP24522 165 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 AQP6Q13520 282 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 TEX30Q5JUR7 227 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 LIPKQ5VXJ0 399 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 VASH1Q7L8A9 365 aaPredicted RBP12.63□□□□□ -0.39
USP39-220ENST00000613444 KLBQ86Z14 1044 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 Q8NA96 180 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 RNF166Q96A37 237 aaPredicted RBP12.63□□□□□ -0.39
USP39-220ENST00000613444 MNTQ99583 582 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 RNF122Q9H9V4 155 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 NDUFB11Q9NX14 153 aa12.63□□□□□ -0.39
USP39-220ENST00000613444 SIRT4Q9Y6E7 314 aaPredicted RBP12.63□□□□□ -0.39
USP39-220ENST00000613444 A0A1B0GTH9 108 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 ZNF670-ZNF695F2Z2N8 137 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 AKAP8O43823 692 aaKnown RBP12.62□□□□□ -0.39
USP39-220ENST00000613444 ATE1O95260 518 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 TGM6O95932 706 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 MT-ND5P03915 603 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 FAM87AP0C7U9 286 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 LAP3P28838 519 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 ENTPD1P49961 510 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 ADAM8P78325 824 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 BDH1Q02338 343 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 TP53I3Q53FA7 332 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 AAED1Q7RTV5 226 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 FGD2Q7Z6J4 655 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 C11orf40Q8WZ69 217 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 INTS12Q96CB8 462 aaKnown RBP12.62□□□□□ -0.39
USP39-220ENST00000613444 PELI1Q96FA3 418 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 ZNF71Q9NQZ8 489 aaPredicted RBP12.62□□□□□ -0.39
USP39-220ENST00000613444 SF3B6Q9Y3B4 125 aaKnown RBP12.62□□□□□ -0.39
USP39-220ENST00000613444 ZNF724A8MTY0 619 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 J3QLW9 94 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 LRRTM2O43300 516 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 UPK3AO75631 287 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 ABHD16AO95870 558 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 ZNF19P17023 458 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 EDNRAP25101 427 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 CDAP32320 146 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 ACTA2P62736 377 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 ACTG2P63267 376 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 ZNF324BQ6AW86 544 aaPredicted RBP12.62□□□□□ -0.39
USP39-220ENST00000613444 FOXL2NBQ6ZUU3 175 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 TUSC5Q8IXB3 177 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 ZFP41Q8N8Y5 198 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 OR6N1Q8NGY5 312 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 ZCCHC14Q8WYQ9 949 aaKnown RBP12.62□□□□□ -0.39
USP39-220ENST00000613444 PNPLA2Q96AD5 504 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 ZNF837Q96EG3 531 aaPredicted RBP12.62□□□□□ -0.39
USP39-220ENST00000613444 OR51E2Q9H255 320 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 MRM2Q9UI43 246 aaKnown RBP12.62□□□□□ -0.39
USP39-220ENST00000613444 LAMP5Q9UJQ1 280 aa12.62□□□□□ -0.39
USP39-220ENST00000613444 GPR171O14626 319 aa12.61□□□□□ -0.39
USP39-220ENST00000613444 NR2C1P13056 603 aa12.61□□□□□ -0.39
USP39-220ENST00000613444 PCSK6P29122 969 aa12.61□□□□□ -0.39
USP39-220ENST00000613444 RNPS1Q15287 305 aaKnown RBP12.61□□□□□ -0.39
USP39-220ENST00000613444 KCNMB1Q16558 191 aa12.61□□□□□ -0.39
USP39-220ENST00000613444 LINGO2Q7L985 606 aa12.61□□□□□ -0.39
USP39-220ENST00000613444 CHMP1BQ7LBR1 199 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms