RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 KLHL12Q53G59 568 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 LINC01590Q5TEZ4 76 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 XKRXQ6PP77 449 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 MEPCEQ7L2J0 689 aaKnown RBP12.62□□□□□ -0.39
UPF1-211ENST00000600868 LUZP2Q86TE4 346 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 ZNF433Q8N7K0 673 aaPredicted RBP12.62□□□□□ -0.39
UPF1-211ENST00000600868 ZNRF4Q8WWF5 429 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 BOD1Q96IK1 185 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 TEAD3Q99594 435 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 FOXB1Q99853 325 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 TMEM38BQ9NVV0 291 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 ELOVL5Q9NYP7 299 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 PCNX1Q96RV3 2341 aa12.62□□□□□ -0.39
UPF1-211ENST00000600868 CCDC182A6NF36 153 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 FAM171A2A8MVW0 826 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 HRGP04196 525 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 GAAP10253 952 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 PLA2G2AP14555 144 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 NPR2P20594 1047 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 HTR1FP30939 366 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 FMO3P31513 532 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 GUCA1AP43080 201 aaPredicted RBP12.61□□□□□ -0.39
UPF1-211ENST00000600868 CDH11P55287 796 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 ARF1P84077 181 aaKnown RBP12.61□□□□□ -0.39
UPF1-211ENST00000600868 HSF2Q03933 536 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 DBPQ10586 325 aaPredicted RBP12.61□□□□□ -0.39
UPF1-211ENST00000600868 KCNMB1Q16558 191 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 FBXL19-AS1Q494R0 122 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 LCN1P1Q5VSP4 162 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 CXorf67Q86X51 503 aaPredicted RBP12.61□□□□□ -0.39
UPF1-211ENST00000600868 ZNF808Q8N4W9 903 aaPredicted RBP12.61□□□□□ -0.39
UPF1-211ENST00000600868 C1orf162Q8NEQ5 155 aaPredicted RBP12.61□□□□□ -0.39
UPF1-211ENST00000600868 OR51L1Q8NGJ5 315 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 OR6K6Q8NGW6 343 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 CNIH3Q8TBE1 160 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 CA5BP1Q8WTZ4 195 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 ITLN2Q8WWU7 325 aaPredicted RBP12.61□□□□□ -0.39
UPF1-211ENST00000600868 CNBD2Q96M20 576 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 HDHD5Q9BXW7 423 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 NELFAQ9H3P2 528 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 HAO2Q9NYQ3 351 aa12.61□□□□□ -0.39
UPF1-211ENST00000600868 WARS2Q9UGM6 360 aaKnown RBP12.61□□□□□ -0.39
UPF1-211ENST00000600868 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.61□□□□□ -0.39
UPF1-211ENST00000600868 A0A1W2PPL8 197 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 ZG16O60844 167 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 PSMB1P20618 241 aaKnown RBP12.6□□□□□ -0.39
UPF1-211ENST00000600868 CDAP32320 146 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 CD79BP40259 229 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 CXCR4P61073 352 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 RPS7P62081 194 aaKnown RBP12.6□□□□□ -0.39
UPF1-211ENST00000600868 MED21Q13503 144 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 SFRP5Q5T4F7 317 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 C9orf135Q5VTT2 229 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 OR7E24Q6IFN5 339 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 LAIR2Q6ISS4 152 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 KRT80Q6KB66 452 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 ANKRD16Q6P6B7 361 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 SLC22A24Q8N4F4 322 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 SLC26A10Q8NG04 563 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 OR1K1Q8NGR3 316 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 BCL2L2Q92843 193 aaPredicted RBP12.6□□□□□ -0.39
UPF1-211ENST00000600868 KISS1RQ969F8 398 aaPredicted RBP12.6□□□□□ -0.39
UPF1-211ENST00000600868 NABP1Q96AH0 204 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 MARCH7Q9H992 704 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 SEC61A2Q9H9S3 476 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 SIAEQ9HAT2 523 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 POLE4Q9NR33 117 aa12.6□□□□□ -0.39
UPF1-211ENST00000600868 MRPL22Q9NWU5 206 aaKnown RBP12.6□□□□□ -0.39
UPF1-211ENST00000600868 DIDO1Q9BTC0 2240 aaKnown RBP12.6□□□□□ -0.39
UPF1-211ENST00000600868 J3QKU1 62 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 LYZL6O75951 148 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 GPANK1O95872 356 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 TFP02787 698 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 OR8G3PP0DMU2 310 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 HOXB1P14653 301 aaPredicted RBP12.59□□□□□ -0.39
UPF1-211ENST00000600868 MSR1P21757 451 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 GSTT1P30711 240 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 LSM6P62312 80 aaKnown RBP12.59□□□□□ -0.39
UPF1-211ENST00000600868 CSNK2BP67870 215 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 POU4F2Q12837 409 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 GGTLC2Q14390 218 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 GABRA6Q16445 453 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 SMN1Q16637 294 aaKnown RBP12.59□□□□□ -0.39
UPF1-211ENST00000600868 C6orf141Q5SZD1 244 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 FAM27BQ5VT28 67 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 STAC2Q6ZMT1 411 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 ZNF813Q6ZN06 617 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 ZNF511Q8NB15 262 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 C11orf40Q8WZ69 217 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 ZMYND19Q96E35 227 aaPredicted RBP12.59□□□□□ -0.39
UPF1-211ENST00000600868 LRRC46Q96FV0 321 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 FOXN4Q96NZ1 517 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 OR10A4Q9H209 315 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 KCNJ16Q9NPI9 418 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 PLCXD1Q9NUJ7 323 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 MRPS18AQ9NVS2 196 aaKnown RBP12.59□□□□□ -0.39
UPF1-211ENST00000600868 GALNT8Q9NY28 637 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 UBAP1Q9NZ09 502 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 KCNG2Q9UJ96 466 aa12.59□□□□□ -0.39
UPF1-211ENST00000600868 RPL36Q9Y3U8 105 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 299.7 ms