RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	TMEM225	Q6GV28	225 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	ZNF474	Q6S9Z5	364 aa	Predicted RBP	11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	C20orf204	Q6ZNR8	217 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	SLC35D2	Q76EJ3	337 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	JAZF1	Q86VZ6	243 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	WDFY1	Q8IWB7	410 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	OR9Q1	Q8NGQ5	310 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	ZNF519	Q8TB69	540 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	ASB10	Q8WXI3	467 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	ROBO4	Q8WZ75	1007 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	ZNF566	Q969W8	418 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	TXNDC15	Q96J42	360 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012		Q96MF0	132 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	NMNAT3	Q96T66	252 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	OPN3	Q9H1Y3	402 aa	Predicted RBP	11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	UBTD1	Q9HAC8	227 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	FANCF	Q9NPI8	374 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	MED29	Q9NX70	200 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	GRHPR	Q9UBQ7	328 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	RASD1	Q9Y272	281 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	ZNF175	Q9Y473	711 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	NOX1	Q9Y5S8	564 aa		11.18	□□□□□ -0.62
UPF1-208	ENST00000600012	C16orf97	H3BN30	126 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	DNPH1	O43598	174 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	TRAF3IP2	O43734	574 aa	Predicted RBP	11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	GYPB	P06028	91 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	CD8B	P10966	210 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	EEF1B2	P24534	225 aa	Known RBP	11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	DAP3	P51398	398 aa	Known RBP	11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	CDH11	P55287	796 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	GABARAPL2	P60520	117 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	CXCR4	P61073	352 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	SIRPA	P78324	504 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	ZNF91	Q05481	1191 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	C1D	Q13901	141 aa	Known RBP	11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	ARMC4	Q5T2S8	1044 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	MEDAG	Q5VYS4	303 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	ABLIM2	Q6H8Q1	611 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	NIPAL3	Q6P499	406 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	AHSA2	Q719I0	299 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	PXK	Q7Z7A4	578 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	CIART	Q8N365	385 aa	Predicted RBP	11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	ARIH2OS	Q8N7S6	290 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	NPEPL1	Q8NDH3	523 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	CPNE4	Q96A23	557 aa	Predicted RBP	11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	PERP	Q96FX8	193 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012		Q96MT0	163 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	OXGR1	Q96P68	337 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	EMC6	Q9BV81	110 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	YTHDF1	Q9BYJ9	559 aa	Known RBP	11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	RNF122	Q9H9V4	155 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	PLCXD1	Q9NUJ7	323 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	SCN3B	Q9NY72	215 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	BLOC1S6	Q9UL45	172 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	TPRKB	Q9Y3C4	175 aa		11.17	□□□□□ -0.62
UPF1-208	ENST00000600012	USF3	Q68DE3	2245 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	OR6C68	A6NDL8	312 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	CCDC182	A6NF36	153 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	NPIPB13	A6NJU9	1138 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	NPIPB4	C9JG80	1138 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	PTGES3L	E9PB15	166 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	PRODH	O43272	600 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	APOL3	O95236	402 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	BCL10	O95999	233 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	REN	P00797	406 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	CGA	P01215	116 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	DBT	P11182	482 aa	Known RBP	11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	FCGR2A	P12318	317 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	PAICS	P22234	425 aa	Known RBP	11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	BID	P55957	195 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	RPS3A	P61247	264 aa	Known RBP	11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	RUNX1T1	Q06455	604 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	APOF	Q13790	326 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	KLHL12	Q53G59	568 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	SLC25A30	Q5SVS4	291 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	NXNL2	Q5VZ03	156 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	NHLRC1	Q6VVB1	395 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	FCRLA	Q7L513	359 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	GID4	Q8IVV7	300 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	ZNF540	Q8NDQ6	660 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	OR9K2	Q8NGE7	335 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	FNDC9	Q8TBE3	224 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	GGH	Q92820	318 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	PTP4A1	Q93096	173 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	TSSK2	Q96PF2	358 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	DDO	Q99489	341 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	GSX2	Q9BZM3	304 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	OR51V1	Q9H2C8	321 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	TIGAR	Q9NQ88	270 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	RPRD1B	Q9NQG5	326 aa	Known RBP	11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	ERVK-18	Q9QC07	812 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	PROCR	Q9UNN8	238 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	DNHD1	Q96M86	4753 aa		11.16	□□□□□ -0.62
UPF1-208	ENST00000600012	RTTN	Q86VV8	2226 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	TRIM64	A6NGJ6	449 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	XKRY	O14609	159 aa		11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	SMAD7	O15105	426 aa	Known RBP	11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	TRMU	O75648	421 aa	Known RBP	11.15	□□□□□ -0.62
UPF1-208	ENST00000600012	VAMP5	O95183	116 aa		11.15	□□□□□ -0.62

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