RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TCTEX1D2Q8WW35 142 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 PTTG3PQ9NZH4 202 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 AADACP22760 399 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 ANKRD13BQ86YJ7 626 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 SHISA4Q96DD7 197 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 DPCDQ9BVM2 203 aaPredicted RBP18.75■□□□□ 0.59
UPF1-207ENST00000599848 CXorf36Q9H7Y0 433 aa18.75■□□□□ 0.59
UPF1-207ENST00000599848 MBD1Q9UIS9 605 aaPredicted RBP18.75■□□□□ 0.59
UPF1-207ENST00000599848 A0A0U1RQK1 487 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 PRRT4C9JH25 899 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 CXCL13O43927 109 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 HLA-DOBP13765 273 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 OR1C1Q15619 314 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 PRAMEF5Q5TYX0 476 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 PRAMEF6Q5VXH4 476 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 CD163Q86VB7 1156 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 NMNAT3Q96T66 252 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 PCP4L1A6NKN8 68 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 AGFG1P52594 562 aaKnown RBP18.74■□□□□ 0.59
UPF1-207ENST00000599848 SSPNQ14714 243 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 EGLN2Q96KS0 407 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 RYDENQ9NUL5 291 aaKnown RBP18.74■□□□□ 0.59
UPF1-207ENST00000599848 MYH1P12882 1939 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 FAM183AA6NL82 134 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 ZNF195O14628 629 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 GPR12P47775 334 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 GABRA4P48169 554 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 SHEQ5VZ18 495 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 SMAP2Q8WU79 429 aaPredicted RBP18.74■□□□□ 0.59
UPF1-207ENST00000599848 RAB1BQ9H0U4 201 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 OR7A17O14581 309 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 METTL15P1P0C7V9 234 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 PRKACAP17612 351 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 MTNR1BP49286 362 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 TATDN3Q17R31 274 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 LHX8Q68G74 356 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 PLXDC2Q6UX71 529 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 CDC20BQ86Y33 519 aa18.74■□□□□ 0.59
UPF1-207ENST00000599848 K7ESM1 405 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 YIF1AO95070 293 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 HOXB5P09067 269 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 FXNQ16595 210 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 SPACA9Q96E40 222 aaPredicted RBP18.73■□□□□ 0.59
UPF1-207ENST00000599848 MRPS24Q96EL2 167 aaKnown RBP18.73■□□□□ 0.59
UPF1-207ENST00000599848 LINC00615Q96LM1 132 aaPredicted RBP18.73■□□□□ 0.59
UPF1-207ENST00000599848 OR51J1Q9H342 316 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 DLL4Q9NR61 685 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 RPH3ALQ9UNE2 315 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 M0R082 166 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 ST6GAL1P15907 406 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 PTGER1P34995 402 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 FZD2Q14332 565 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 KCNAB1Q14722 419 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 C1orf53Q5VUE5 145 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 FAM212BQ9NTI7 297 aaPredicted RBP18.73■□□□□ 0.59
UPF1-207ENST00000599848 A0A1B0GV50 99 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 C1orf196B1AJZ1 125 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 SLC16A6O15403 523 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 SULT1B1O43704 296 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 QDPRP09417 244 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 TAS2R45P59539 299 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 PFN3P60673 137 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 RPS27AP62979 156 aaKnown RBP18.73■□□□□ 0.59
UPF1-207ENST00000599848 UBA52P62987 128 aaKnown RBP18.73■□□□□ 0.59
UPF1-207ENST00000599848 CA13Q8N1Q1 262 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 LKAAEAR1Q8TD35 194 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 SLCO1C1Q9NYB5 712 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 SNX11Q9Y5W9 270 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 TMEM82A0PJX8 343 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 F8W036 122 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 DDOSTP39656 456 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 ASF1BQ9NVP2 202 aa18.73■□□□□ 0.59
UPF1-207ENST00000599848 A0A0D9SG52 128 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 I6L893 689 aaPredicted RBP18.72■□□□□ 0.59
UPF1-207ENST00000599848 GABRPO00591 440 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 TOX3O15405 576 aaPredicted RBP18.72■□□□□ 0.59
UPF1-207ENST00000599848 ZNF750Q32MQ0 723 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 KRBOX4Q5JUW0 171 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 RFPL4BQ6ZWI9 263 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 ASB5Q8WWX0 329 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 BSCL2Q96G97 398 aaPredicted RBP18.72■□□□□ 0.59
UPF1-207ENST00000599848 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.72■□□□□ 0.59
UPF1-207ENST00000599848 PCDHGA5Q9Y5G8 931 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 H7C1C5 153 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 NKX6-1P78426 367 aaPredicted RBP18.72■□□□□ 0.59
UPF1-207ENST00000599848 LINC00346Q8IVM7 164 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 TEX101Q9BY14 249 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 LOC100289279A0A1B0GTE1 492 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 ARPC5O15511 151 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 ARRB2P32121 409 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 GAB1Q13480 694 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 SKA3Q8IX90 412 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 APOBEC4Q8WW27 367 aaKnown RBP18.72■□□□□ 0.59
UPF1-207ENST00000599848 OR11A1Q9GZK7 315 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 COMMD5Q9GZQ3 224 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 CA5AP35218 305 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 DHRS13Q6UX07 377 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 CCDC28AQ8IWP9 274 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 SEH1LQ96EE3 360 aa18.72■□□□□ 0.59
UPF1-207ENST00000599848 GLRX2Q9NS18 164 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms