RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 KRT73Q86Y46 540 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 MREGQ8N565 214 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 DEFB108BQ8NET1 73 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 OR6X1Q8NH79 312 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 PFN4Q8NHR9 129 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 SLC25A40Q8TBP6 338 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 NSMAFQ92636 917 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 MCHR2Q969V1 340 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 LRRC58Q96CX6 371 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 SLC25A44Q96H78 314 aaPredicted RBP7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 JMJD8Q96S16 334 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 ARHGDIGQ99819 225 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 EBF4Q9BQW3 602 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 TMEM43Q9BTV4 400 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 PARD6BQ9BYG5 372 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 OR2J1Q9GZK6 312 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 POFUT1Q9H488 388 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 RAD21L1Q9H4I0 556 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 UNKLQ9H9P5 680 aaKnown RBP7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 TCF7L2Q9NQB0 619 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 THUMPD1Q9NXG2 353 aaKnown RBP7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 SLC13A4Q9UKG4 626 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 SLC7A7Q9UM01 511 aa7.31□□□□□ -1.24
SHKBP1-220ENST00000599716 TRBV5-3A0A0A0MS03 114 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 IGHV3-64DA0A0J9YX35 117 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 IQCMA0A1B0GVH7 501 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 C5orf49A4QMS7 147 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 MGRN1O60291 552 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 TRMUO75648 421 aaKnown RBP7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF205O95201 554 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 FARS2O95363 451 aaKnown RBP7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 GPANK1O95872 356 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 IGHV3-13P01766 116 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF32P17041 273 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 SLC6A2P23975 617 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 APLNRP35414 380 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 MTPNP58546 118 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 SELENOVP59797 346 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 SGCAQ16586 387 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 PCGF3Q3KNV8 242 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 LRIF1Q5T3J3 769 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 WDR93Q6P2C0 686 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 LEG1Q6P5S2 330 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 BLOC1S3Q6QNY0 202 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 EPGNQ6UW88 154 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 SHISA2Q6UWI4 295 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 LINC00114Q6XXX2 140 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 RANBP3LQ86VV4 465 aaPredicted RBP7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 SNX32Q86XE0 403 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 PTOV1Q86YD1 416 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 KIRREL3Q8IZU9 778 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 NOXO1Q8NFA2 376 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 OR6S1Q8NH40 331 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 MOSPD2Q8NHP6 518 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 ADAMTS16Q8TE57 1224 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 RAB1CQ92928 201 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 TRIM44Q96DX7 344 aaPredicted RBP7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 SPDL1Q96EA4 605 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 ELMOD3Q96FG2 381 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 CPPED1Q9BRF8 314 aaPredicted RBP7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 SPATA5L1Q9BVQ7 753 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 SLCO1B3Q9NPD5 702 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 MEPEQ9NQ76 525 aaPredicted RBP7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 NANSQ9NR45 359 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 TNFRSF19Q9NS68 423 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 SLCO1C1Q9NYB5 712 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 EGFL7Q9UHF1 273 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 PRDM4Q9UKN5 801 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 TRIM33Q9UPN9 1127 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 UGT2A1Q9Y4X1 527 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 USH1CQ9Y6N9 552 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 DYNC2H1Q8NCM8 4307 aaKnown RBP7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 SACSQ9NZJ4 4579 aa7.3□□□□□ -1.24
SHKBP1-220ENST00000599716 SLC22A23A1A5C7 686 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 MCIDASD6RGH6 385 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 J3QLI3 93 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 M0QX08 132 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 CHP2O43745 196 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 SNAP29O95721 258 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 MT-ATP6P00846 226 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 IGHG1P01857 330 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 ASAH2BP0C7U1 165 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 IGHV4-38-2P0DP08 117 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 MDKP21741 143 aaPredicted RBP7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 FUT4P22083 530 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 PRTN3P24158 256 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 FPR2P25090 351 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 STOMP27105 288 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 PCGF2P35227 344 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 AQP2P41181 271 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 ERFP50548 548 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 UGT2B15P54855 530 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 PCBP3P57721 371 aaKnown RBP7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 PSG4Q00888 419 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 TEKQ02763 1124 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 PLP2Q04941 152 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 RPL18Q07020 188 aaKnown RBP7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 BAMBIQ13145 260 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 TOP3AQ13472 1001 aaPredicted RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms