RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 PAQR5Q9NXK6 330 aaPredicted RBP12.1□□□□□ -0.47
SHKBP1-218ENST00000598907 TAS2R5Q9NYW4 299 aa12.1□□□□□ -0.47
SHKBP1-218ENST00000598907 IL20Q9NYY1 176 aa12.1□□□□□ -0.47
SHKBP1-218ENST00000598907 KIF17Q9P2E2 1029 aa12.1□□□□□ -0.47
SHKBP1-218ENST00000598907 SEC14L4Q9UDX3 406 aa12.1□□□□□ -0.47
SHKBP1-218ENST00000598907 PLCE1Q9P212 2302 aa12.1□□□□□ -0.47
SHKBP1-218ENST00000598907 RYR3Q15413 4870 aa12.1□□□□□ -0.47
SHKBP1-218ENST00000598907 LOC102725191A0A1B0GVB3 256 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 AQP7P3A6NL99 342 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 ZNF814B7Z6K7 855 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 TRIM77I1YAP6 450 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 M0R082 166 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 NDUFS8O00217 210 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 PLPP3O14495 311 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 SMAD9O15198 467 aaKnown RBP12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 EIF1BO60739 113 aaKnown RBP12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 AKR7A3O95154 331 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 OSMP13725 252 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 NHLRC1Q6VVB1 395 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 ZNF620Q6ZNG0 422 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 C10orf53Q8N6V4 93 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 TMEM99Q8N816 258 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 ZNF417Q8TAU3 575 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 ABHD3Q8WU67 409 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 CPNE4Q96A23 557 aaPredicted RBP12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 MUCL1Q96DR8 90 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 RDH12Q96NR8 316 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 ZNF587Q96SQ5 575 aaPredicted RBP12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 ASPNQ9BXN1 380 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 GABARAPL3Q9BY60 117 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 TIGARQ9NQ88 270 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 CDH10Q9Y6N8 788 aa12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 KMT2CQ8NEZ4 4911 aaKnown RBP12.09□□□□□ -0.47
SHKBP1-218ENST00000598907 TRAV27A0A087WT01 109 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 HIST1H2ABP04908 130 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 BMP4P12644 408 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 ENPP1P22413 925 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 APEX1P27695 318 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 VHLP40337 213 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 ZNF83P51522 516 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 PRPS1P60891 318 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 ESRRGP62508 458 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 RPL18Q07020 188 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 ITGADQ13349 1161 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 PMS2P3Q13401 168 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 RFX4Q33E94 735 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 RPL13AP3Q6NVV1 102 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 SHISA2Q6UWI4 295 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 HIST3H2AQ7L7L0 130 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 NANOGNBQ7Z5D8 188 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 SLC43A2Q8N370 569 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 GALNT4Q8N4A0 578 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 OR8D4Q8NGM9 314 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 OR51A7Q8NH64 312 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 MOSPD2Q8NHP6 518 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 HIST1H2ACQ93077 130 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 SORCS2Q96PQ0 1159 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 GPX7Q96SL4 187 aaPredicted RBP12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 NAA11Q9BSU3 229 aaPredicted RBP12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 VCX3BQ9H321 246 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 OR52D1Q9H346 318 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 EGLN3Q9H6Z9 239 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 B3GAT1Q9P2W7 334 aa12.08□□□□□ -0.48
SHKBP1-218ENST00000598907 CYTIPO60759 359 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 NDUFB2O95178 105 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 SNAP29O95721 258 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 IGFBP1P08833 259 aaPredicted RBP12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 GTF2E2P29084 291 aaKnown RBP12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 AQP2P41181 271 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 CRISP1P54107 249 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 RAD23AP54725 363 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 CDK5Q00535 292 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 PUDPQ08623 228 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 NPRL3Q12980 569 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 ABLIM2Q6H8Q1 611 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 SMARCD3Q6STE5 483 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 GALNT5Q7Z7M9 940 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 CCDC103Q8IW40 242 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 TUSC5Q8IXB3 177 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 LINC01356Q8N9X3 169 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 ZHX1-C8orf76Q96EF9 292 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 RADILQ96JH8 1075 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 MBOAT4Q96T53 435 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 ZNF747Q9BV97 191 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 SMPD3Q9NY59 655 aaPredicted RBP12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 ENOPH1Q9UHY7 261 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 PCDHB10Q9UN67 800 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 RASD1Q9Y272 281 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 ATP23Q9Y6H3 246 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 PMF1-BGLAPU3KQ54 211 aa12.07□□□□□ -0.48
SHKBP1-218ENST00000598907 LOC390937A0A1W2PQ73 354 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 ZNF716A6NP11 495 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 BLOC1S5-TXNDC5H3BN57 136 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 VAMP5O95183 116 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 ADORA3P0DMS8 318 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 EPHA2P29317 976 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 POLR2IP36954 125 aaKnown RBP12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 GIPRP48546 466 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 SLC16A1P53985 500 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 SLC17A1Q14916 467 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms