RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 COX4I2Q96KJ9 171 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 ZNF570Q96NI8 536 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 BTBD10Q9BSF8 475 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 THTPAQ9BU02 230 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 CACNG6Q9BXT2 260 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 SIAEQ9HAT2 523 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 AURKCQ9UQB9 309 aa13.96□□□□□ -0.17
TRIM28-213ENST00000598355 NSD1Q96L73 2696 aaPredicted RBP13.96□□□□□ -0.18
TRIM28-213ENST00000598355 YLPM1P49750 1951 aaKnown RBP13.95□□□□□ -0.18
TRIM28-213ENST00000598355 PRSS37A4D1T9 235 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 AQP12BA6NM10 295 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 OR10H3O60404 316 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 NDUFS7O75251 213 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 PATE4P0C8F1 98 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 CDAP32320 146 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 RPL4P36578 427 aaKnown RBP13.95□□□□□ -0.18
TRIM28-213ENST00000598355 PIGFQ07326 219 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 TSPAN31Q12999 210 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 KRR1Q13601 381 aaKnown RBP13.95□□□□□ -0.18
TRIM28-213ENST00000598355 SLC36A2Q495M3 483 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 FAM27BQ5VT28 67 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 SMARCD3Q6STE5 483 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 ZNF620Q6ZNG0 422 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 ADCK1Q86TW2 530 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 AQP12AQ8IXF9 295 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 FANK1Q8TC84 345 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 GTPBP3Q969Y2 492 aaKnown RBP13.95□□□□□ -0.18
TRIM28-213ENST00000598355 RASD2Q96D21 266 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 Q96MF0 132 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 OR52D1Q9H346 318 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 VNN3Q9NY84 501 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 VSX1Q9NZR4 365 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-213ENST00000598355 GRHPRQ9UBQ7 328 aa13.95□□□□□ -0.18
TRIM28-213ENST00000598355 C2CD3Q4AC94 2353 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 TEX13CA0A0J9YWL9 993 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 H7C1C5 153 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 ARPC3O15145 178 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 GYG2O15488 501 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 SNAP29O95721 258 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 RAP2AP10114 183 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 NR4A1P22736 598 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 IFNGR2P38484 337 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 LCN6P62502 163 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 CHRNB3Q05901 458 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 GK3PQ14409 553 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 RAB39AQ14964 217 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 FAM98BQ52LJ0 330 aaKnown RBP13.94□□□□□ -0.18
TRIM28-213ENST00000598355 CSPG4Q6UVK1 2322 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 SLC16A14Q7RTX9 510 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 LINC00471Q8N535 108 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 RBP7Q96R05 134 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 SNX18Q96RF0 628 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 C1orf198Q9H425 327 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 PLK3Q9H4B4 646 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 BARX1Q9HBU1 254 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-213ENST00000598355 GDF2Q9UK05 429 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-213ENST00000598355 TMCC3Q9ULS5 477 aa13.94□□□□□ -0.18
TRIM28-213ENST00000598355 IMPA2O14732 288 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 CST2P09228 141 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 CTLA4P16410 223 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 HOXB6P17509 224 aaKnown RBP13.93□□□□□ -0.18
TRIM28-213ENST00000598355 SERPINF1P36955 418 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 SNTB2Q13425 540 aaKnown RBP13.93□□□□□ -0.18
TRIM28-213ENST00000598355 DAG1Q14118 895 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 ENDOGQ14249 297 aaKnown RBP13.93□□□□□ -0.18
TRIM28-213ENST00000598355 MSMPQ1L6U9 139 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 RFX4Q33E94 735 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 OR2T5Q6IEZ7 315 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 TMEM53Q6P2H8 277 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 PTCHD4Q6ZW05 846 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 OR9Q2Q8NGE9 314 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 OR2T29Q8NH02 315 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 GNPDA2Q8TDQ7 276 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 NSMAFQ92636 917 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 FBXO17Q96EF6 278 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 C18orf12Q96KH6 178 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 POLE4Q9NR33 117 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 IL20RAQ9UHF4 553 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 SLC7A8Q9UHI5 535 aa13.93□□□□□ -0.18
TRIM28-213ENST00000598355 TCRBV3S1A0A5B6 114 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 TMEM129A0AVI4 362 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 B9A039 149 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 TNFRSF11BO00300 401 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 XKRYO14609 159 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 DNAJC8O75937 253 aaPredicted RBP13.92□□□□□ -0.18
TRIM28-213ENST00000598355 OR4A8P0C604 315 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 ZNF32P17041 273 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 MSR1P21757 451 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 SLC6A6P31641 620 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 THBS4P35443 961 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 GLRXP35754 106 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 PPOXP50336 477 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 RPS6KA3P51812 740 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 CIARTQ8N365 385 aaPredicted RBP13.92□□□□□ -0.18
TRIM28-213ENST00000598355 SLC30A7Q8NEW0 376 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 CANT1Q8WVQ1 401 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 LRGUKQ96M69 825 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 WACQ9BTA9 647 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 BDH2Q9BUT1 245 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 CADM1Q9BY67 442 aaKnown RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms