RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TAS2R41P59536 307 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 SELENOWP63302 87 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 LIPEQ05469 1076 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 TMEM154Q6P9G4 183 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 LRFN4Q6PJG9 635 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 THSD4Q6ZMP0 1018 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 VTCN1Q7Z7D3 282 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 FGFBP3Q8TAT2 258 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 SYNPRQ8TBG9 265 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 RAB39BQ96DA2 213 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 MYLK2Q9H1R3 596 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 C1orf198Q9H425 327 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 ZNF665Q9H7R5 613 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 HINT3Q9NQE9 182 aaKnown RBP10.68□□□□□ -0.7
TRIM28-212ENST00000597995 TAAR3PQ9P1P4 343 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 MGAM2Q2M2H8 2515 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 WNK2Q9Y3S1 2297 aa10.68□□□□□ -0.7
TRIM28-212ENST00000597995 LOC105371242A0A075B767 164 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 A0A0G2JMP0 313 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 A0A0X1KG70 313 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 FFAR1O14842 300 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 RNF13O43567 381 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 PLPP2O43688 288 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 PIP5K1CO60331 668 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 DEAF1O75398 565 aaPredicted RBP10.67□□□□□ -0.7
TRIM28-212ENST00000597995 OR7A10O76100 309 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 OR6A2O95222 327 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 MPZL1O95297 269 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 FARS2O95363 451 aaKnown RBP10.67□□□□□ -0.7
TRIM28-212ENST00000597995 CLPTM1O96005 669 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 AVPP01185 164 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 PTHP01270 115 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 IGF2P01344 180 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 PATE4P0C8F1 98 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 PGA4P0DJD7 388 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 PGA3P0DJD8 388 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 FUT1P19526 365 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 RBM34P42696 430 aaKnown RBP10.67□□□□□ -0.7
TRIM28-212ENST00000597995 SLC7A2P52569 658 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 KLF3P57682 345 aaPredicted RBP10.67□□□□□ -0.7
TRIM28-212ENST00000597995 RPL18Q07020 188 aaKnown RBP10.67□□□□□ -0.7
TRIM28-212ENST00000597995 MOGQ16653 247 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 C1QL2Q7Z5L3 287 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 TSEN54Q7Z6J9 526 aaKnown RBP10.67□□□□□ -0.7
TRIM28-212ENST00000597995 SLC30A7Q8NEW0 376 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 OR4M2Q8NGB6 313 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 MOSPD2Q8NHP6 518 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 ZNF519Q8TB69 540 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 SNX33Q8WV41 574 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 TMEM239Q8WW34 195 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 LIPHQ8WWY8 451 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 C11orf40Q8WZ69 217 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 TPD52L3Q96J77 140 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 ELAC2Q9BQ52 826 aaKnown RBP10.67□□□□□ -0.7
TRIM28-212ENST00000597995 SUCNR1Q9BXA5 334 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 TMPRSS13Q9BYE2 586 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 POLR2J2Q9GZM3 115 aaKnown RBP10.67□□□□□ -0.7
TRIM28-212ENST00000597995 POLR2J3Q9H1A7 115 aaKnown RBP10.67□□□□□ -0.7
TRIM28-212ENST00000597995 MAN2C1Q9NTJ4 1040 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 TMEM38BQ9NVV0 291 aa10.67□□□□□ -0.7
TRIM28-212ENST00000597995 IGHV1-69-2A0A0G2JMI3 117 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 BLOC1S5-TXNDC5H3BN57 136 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 J3KTA2 159 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 DHHO43323 396 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 ATP8B1O43520 1251 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 MGRN1O60291 552 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 CDC14BO60729 498 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 CCDC22O60826 627 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 RGS9O75916 674 aaPredicted RBP10.66□□□□□ -0.7
TRIM28-212ENST00000597995 SNAP29O95721 258 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 IFNA14P01570 189 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 F13BP05160 661 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 FAM157BP0CG42 384 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 THRBP10828 461 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 UMPSP11172 480 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 DRD4P21917 467 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 GATA3P23771 443 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 AQP2P41181 271 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 RAD52P43351 418 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 YAP1P46937 504 aaKnown RBP10.66□□□□□ -0.7
TRIM28-212ENST00000597995 GSK3BP49841 420 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 UCP2P55851 309 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 CCL8P80075 99 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 MVKQ03426 396 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 LAPTM4AQ15012 233 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 HIST3H3Q16695 136 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 ALKBH6Q3KRA9 238 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 SLC36A2Q495M3 483 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 NRN1LQ496H8 165 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 TMEM53Q6P2H8 277 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 NANOGNBQ7Z5D8 188 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 ARPINQ7Z6K5 226 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 OR1J2Q8NGS2 313 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 NANPQ8TBE9 248 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 ZNF566Q969W8 418 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 SGTBQ96EQ0 304 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 SLC25A44Q96H78 314 aaPredicted RBP10.66□□□□□ -0.7
TRIM28-212ENST00000597995 PRRC1Q96M27 445 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 SEPHS2Q99611 448 aa10.66□□□□□ -0.7
TRIM28-212ENST00000597995 MRPL13Q9BYD1 178 aaKnown RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms