RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 TMEM53Q6P2H8 277 aa13.58□□□□□ -0.24
LIG3-215ENST00000592690 FNDC8Q8TC99 324 aa13.58□□□□□ -0.24
LIG3-215ENST00000592690 SLC7A6OSQ96CW6 309 aaPredicted RBP13.58□□□□□ -0.24
LIG3-215ENST00000592690 COX4I2Q96KJ9 171 aa13.58□□□□□ -0.24
LIG3-215ENST00000592690 SMR3AQ99954 134 aa13.58□□□□□ -0.24
LIG3-215ENST00000592690 NDEL1Q9GZM8 345 aa13.58□□□□□ -0.24
LIG3-215ENST00000592690 MAGIXQ9H6Y5 334 aa13.58□□□□□ -0.24
LIG3-215ENST00000592690 ZNF442Q9H7R0 627 aa13.58□□□□□ -0.24
LIG3-215ENST00000592690 RNF121Q9H920 327 aa13.58□□□□□ -0.24
LIG3-215ENST00000592690 NRIP3Q9NQ35 241 aa13.58□□□□□ -0.24
LIG3-215ENST00000592690 TMCC3Q9ULS5 477 aa13.58□□□□□ -0.24
LIG3-215ENST00000592690 LYVE1Q9Y5Y7 322 aa13.58□□□□□ -0.24
LIG3-215ENST00000592690 A0A1W2PPL8 197 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 SLC22A23A1A5C7 686 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 SOCS2O14508 198 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 XKRYO14609 159 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 IMPA2O14732 288 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 ACOT8O14734 319 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 SMAD7O15105 426 aaKnown RBP13.57□□□□□ -0.24
LIG3-215ENST00000592690 GPRIN2O60269 458 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 PPP1R3DO95685 299 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 SERPINA5P05154 406 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 INHBBP09529 407 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 NPR2P20594 1047 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 NR4A1P22736 598 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 FPR3P25089 353 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 SDHAP31040 664 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 CHRNB3Q05901 458 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 PPP1R8Q12972 351 aaKnown RBP13.57□□□□□ -0.24
LIG3-215ENST00000592690 ETFDHQ16134 617 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 SGCAQ16586 387 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 MSMPQ1L6U9 139 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 PGBD2Q6P3X8 592 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 SMARCD3Q6STE5 483 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 DNM1P46Q6ZS02 220 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 FOXL2NBQ6ZUU3 175 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 DPPA2Q7Z7J5 298 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 OR4C15Q8NGM1 316 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 BDH2Q9BUT1 245 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 OR52D1Q9H346 318 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 SIAEQ9HAT2 523 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 VNN3Q9NY84 501 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 FBXL3Q9UKT7 428 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 IER3IP1Q9Y5U9 82 aa13.57□□□□□ -0.24
LIG3-215ENST00000592690 YLPM1P49750 1951 aaKnown RBP13.56□□□□□ -0.24
LIG3-215ENST00000592690 PRSS37A4D1T9 235 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 TNFRSF11BO00300 401 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 GYG2O15488 501 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 SSX4O60224 188 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 MGRN1O60291 552 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 KRT36O76013 467 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 CCL2P13500 99 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 CTLA4P16410 223 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 ZNF32P17041 273 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 LAP3P28838 519 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 GSSP48637 474 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 HMGA2P52926 109 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 NUDT6P53370 316 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 SNRPD2P62316 118 aaKnown RBP13.56□□□□□ -0.24
LIG3-215ENST00000592690 TNK1Q13470 666 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 EFNB3Q15768 340 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 DNAL1Q4LDG9 190 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 FAM98BQ52LJ0 330 aaKnown RBP13.56□□□□□ -0.24
LIG3-215ENST00000592690 GPR139Q6DWJ6 353 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 C1orf94Q6P1W5 598 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 DPY19L2P2Q6ZN68 376 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 PTCHD4Q6ZW05 846 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 SVOPLQ8N434 492 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 PAQR4Q8N4S7 273 aaPredicted RBP13.56□□□□□ -0.24
LIG3-215ENST00000592690 SLC30A7Q8NEW0 376 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 OR9Q2Q8NGE9 314 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 LRGUKQ96M69 825 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 FOXN4Q96NZ1 517 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 BTBD10Q9BSF8 475 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 SYT4Q9H2B2 425 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 BARX1Q9HBU1 254 aaPredicted RBP13.56□□□□□ -0.24
LIG3-215ENST00000592690 MTORP42345 2549 aa13.56□□□□□ -0.24
LIG3-215ENST00000592690 ZANQ9Y493 2812 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 B9A039 149 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 LY6HO94772 140 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 SCG5P05408 212 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 BMP4P12644 408 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 APEX1P27695 318 aaKnown RBP13.55□□□□□ -0.24
LIG3-215ENST00000592690 IFNGR2P38484 337 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 GALK2Q01415 458 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 TRAP1Q12931 704 aaKnown RBP13.55□□□□□ -0.24
LIG3-215ENST00000592690 TSPAN31Q12999 210 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 RAB35Q15286 201 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 RFX4Q33E94 735 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 PABPC1L2AQ5JQF8 200 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 FAM27BQ5VT28 67 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 PGM2L1Q6PCE3 622 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 ADGRG5Q8IZF4 528 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 CPEB3Q8NE35 698 aaKnown RBP13.55□□□□□ -0.24
LIG3-215ENST00000592690 AKR7LQ8NHP1 331 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 GNPDA2Q8TDQ7 276 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 SAMD8Q96LT4 415 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 SORCS2Q96PQ0 1159 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 PLK3Q9H4B4 646 aa13.55□□□□□ -0.24
LIG3-215ENST00000592690 EMC7Q9NPA0 242 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms