RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 ZNF347Q96SE7 839 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 PIMREGQ9BSJ6 248 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 MUC13Q9H3R2 512 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 RNF121Q9H920 327 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 NOX3Q9HBY0 568 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 C20orf141Q9NUB4 165 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 ADA2Q9NZK5 511 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 EIF3KQ9UBQ5 218 aaKnown RBP9.07□□□□□ -0.96
LIG3-212ENST00000590181 GRHPRQ9UBQ7 328 aa9.07□□□□□ -0.96
LIG3-212ENST00000590181 CGGBP1Q9UFW8 167 aaPredicted RBP9.07□□□□□ -0.96
LIG3-212ENST00000590181 GDF2Q9UK05 429 aaPredicted RBP9.07□□□□□ -0.96
LIG3-212ENST00000590181 A0A087WUU8 490 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 C12orf71A8MTZ7 269 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 J3QW42 95 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 hCG_2039718K7EN88 272 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 M0R233 179 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 IMPA2O14732 288 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 FFAR1O14842 300 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 IDH3BO43837 385 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 ICMTO60725 284 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 PRSS23O95084 383 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 CD14P08571 375 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 CST2P09228 141 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 FAM157CP0CG43 387 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 TNFRSF1BP20333 461 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 APLNRP35414 380 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 THBS4P35443 961 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 GZMKP49863 264 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 CTXN1P60606 82 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 GNGT1P63211 74 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 SNTB2Q13425 540 aaKnown RBP9.06□□□□□ -0.96
LIG3-212ENST00000590181 GK3PQ14409 553 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 LAPTM4AQ15012 233 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 PCGF3Q3KNV8 242 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 C6orf52Q5T4I8 152 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 PGM2L1Q6PCE3 622 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 VTCN1Q7Z7D3 282 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 ADCK1Q86TW2 530 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 ZNF786Q8N393 782 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 SLC30A7Q8NEW0 376 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 OR4K5Q8NGD3 323 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 ZNF519Q8TB69 540 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 PYURFQ96I23 114 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 C7orf34Q96L11 122 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 DHRS1Q96LJ7 313 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 VRK1Q99986 396 aaPredicted RBP9.06□□□□□ -0.96
LIG3-212ENST00000590181 CDH20Q9HBT6 801 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 CCNB1IP1Q9NPC3 277 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 MAN2C1Q9NTJ4 1040 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 NKIRAS2Q9NYR9 191 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 ZNF224Q9NZL3 707 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 NDUFAF4Q9P032 175 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 LPAR3Q9UBY5 353 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 CDC42EP3Q9UKI2 254 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 TIMM10BQ9Y5J6 103 aa9.06□□□□□ -0.96
LIG3-212ENST00000590181 TENM1Q9UKZ4 2725 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 PTP4A3O75365 173 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 NDUFB2O95178 105 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 COX5BP10606 129 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 ZNF250P15622 560 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 THBS2P35442 1172 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 RPL4P36578 427 aaKnown RBP9.05□□□□□ -0.96
LIG3-212ENST00000590181 RPS6KA3P51812 740 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 UCP2P55851 309 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 TMEM33P57088 247 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 TUBA1BP68363 451 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 TUBA4AP68366 448 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 LSM11P83369 360 aaKnown RBP eCLIP9.05□□□□□ -0.96
LIG3-212ENST00000590181 TEKQ02763 1124 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 HSF2Q03933 536 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 PIGFQ07326 219 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 CD47Q08722 323 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 CYB5R2Q6BCY4 276 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 RPL13AP3Q6NVV1 102 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 DPY19L2P2Q6ZN68 376 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 FOXL2NBQ6ZUU3 175 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 TUBA1AQ71U36 451 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 ZER1Q7Z7L7 766 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 CPEB3Q8NE35 698 aaKnown RBP9.05□□□□□ -0.96
LIG3-212ENST00000590181 SLC7A13Q8TCU3 470 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 NMD3Q96D46 503 aaKnown RBP9.05□□□□□ -0.96
LIG3-212ENST00000590181 NSMCE2Q96MF7 247 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 SNX18Q96RF0 628 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 GPX7Q96SL4 187 aaPredicted RBP9.05□□□□□ -0.96
LIG3-212ENST00000590181 FAM107BQ9H098 131 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 ELOVL3Q9HB03 270 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 DYNLRB1Q9NP97 96 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 IL1RAPQ9NPH3 570 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 CYSLTR2Q9NS75 346 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 REV1Q9UBZ9 1251 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 CD300AQ9UGN4 299 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 ATPIF1Q9UII2 106 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 AURKCQ9UQB9 309 aa9.05□□□□□ -0.96
LIG3-212ENST00000590181 TMEM129A0AVI4 362 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 VWC2LB2RUY7 222 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 SHOX2O60902 331 aaPredicted RBP9.04□□□□□ -0.96
LIG3-212ENST00000590181 NDUFS7O75251 213 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 TXNDC12O95881 172 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 FAM107AO95990 144 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 CELA3BP08861 270 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms