RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PRSS35Q8N3Z0 413 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 NARS2Q96I59 477 aaKnown RBP9.74□□□□□ -0.85
CCDC40-207ENST00000572253 IFT46Q9NQC8 304 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 EXOSC3Q9NQT5 275 aaKnown RBP9.74□□□□□ -0.85
CCDC40-207ENST00000572253 GPR160Q9UJ42 338 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 KCNG2Q9UJ96 466 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 HRH3Q9Y5N1 445 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 TTLL8A6PVC2 850 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 ZNF736B4DX44 427 aaPredicted RBP9.74□□□□□ -0.85
CCDC40-207ENST00000572253 SLC25A12O75746 678 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 HPP00738 406 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 ITGB2P05107 769 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 MPGP29372 298 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 SLC6A8P48029 635 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 DNASE1L1P49184 302 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 ERV3-1Q14264 604 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 TMEM184AQ6ZMB5 413 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 ESX1Q8N693 406 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 C19orf47Q8N9M1 422 aaKnown RBP9.74□□□□□ -0.85
CCDC40-207ENST00000572253 CYB5R1Q9UHQ9 305 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 CNTRLQ7Z7A1 2325 aa9.74□□□□□ -0.85
CCDC40-207ENST00000572253 TMEM272A0A1B0GTI8 110 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 OR14I1A6ND48 311 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 OR2F2O95006 317 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 RLN2P04090 185 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 ITGA5P08648 1049 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 SPARCP09486 303 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 ST6GAL1P15907 406 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 CFPP27918 469 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 HTR2CP28335 458 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 TACR3P29371 465 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 FNTBP49356 437 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 RIDAP52758 137 aaKnown RBP9.73□□□□□ -0.85
CCDC40-207ENST00000572253 IGLV3-21P80748 117 aaPredicted RBP9.73□□□□□ -0.85
CCDC40-207ENST00000572253 FUT7Q11130 342 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 OR2F1Q13607 317 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 FDX2Q6P4F2 183 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 LRRC69Q6ZNQ3 347 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 Q6ZSR6 202 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 ZNF761Q86XN6 746 aaPredicted RBP9.73□□□□□ -0.85
CCDC40-207ENST00000572253 PM20D2Q8IYS1 436 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 SLC37A2Q8TED4 501 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 CHST6Q9GZX3 395 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 EPHA6Q9UF33 1036 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 MELTFP08582 738 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 UBE2IP63279 158 aaKnown RBP9.73□□□□□ -0.85
CCDC40-207ENST00000572253 BTG2P78543 158 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 SERTAD2Q14140 314 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 SCGB2B2Q4G0G5 96 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 ZNF679Q8IYX0 411 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 RELL2Q8NC24 303 aaPredicted RBP9.73□□□□□ -0.85
CCDC40-207ENST00000572253 FBXW5Q969U6 566 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 KTI12Q96EK9 354 aaPredicted RBP9.73□□□□□ -0.85
CCDC40-207ENST00000572253 GAL3ST1Q99999 423 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 ZNF471Q9BX82 626 aaPredicted RBP9.73□□□□□ -0.85
CCDC40-207ENST00000572253 C1orf198Q9H425 327 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 FAM60AQ9NP50 221 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 PCDHB16Q9NRJ7 776 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 ARHGEF17Q96PE2 2063 aaPredicted RBP9.73□□□□□ -0.85
CCDC40-207ENST00000572253 C11orf98E9PRG8 122 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 CTSEP14091 401 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 COL9A1P20849 921 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 MAOAP21397 527 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 ADAM8P78325 824 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 SKP2Q13309 424 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 TAF13Q15543 124 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 CD226Q15762 336 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 MAMDC2Q7Z304 686 aaPredicted RBP9.73□□□□□ -0.85
CCDC40-207ENST00000572253 ZNF584Q8IVC4 421 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 BPIFB2Q8N4F0 458 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 PLPP7Q8NBV4 271 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 PMEPA1Q969W9 287 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 IGFLR1Q9H665 355 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 A0A0A6YYH2 397 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 OR5H14A6NHG9 310 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 A6NJ64 397 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 TMEM200CA6NKL6 621 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 TGFBR3LH3BV60 316 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 M0QYG6 137 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 RAD1O60671 282 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 UTS2O95399 124 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 NUDT14O95848 222 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 CSRP1P21291 193 aaKnown RBP9.73□□□□□ -0.85
CCDC40-207ENST00000572253 PPP1CAP62136 330 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 HHEXQ03014 270 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 KCNAB1Q14722 419 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 MEF2DQ14814 521 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 PRAMEF17Q5VTA0 474 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 POMZP3Q6PJE2 187 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 SLC35D2Q76EJ3 337 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 NDUFAF7Q7L592 441 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 STPG2Q8N412 459 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 RNF128Q8TEB7 428 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 ELF4Q99607 663 aaPredicted RBP9.73□□□□□ -0.85
CCDC40-207ENST00000572253 ZNF416Q9BWM5 594 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 RASL12Q9NYN1 266 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 SLC22A13Q9Y226 551 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 FARSAQ9Y285 508 aaKnown RBP9.73□□□□□ -0.85
CCDC40-207ENST00000572253 F5P12259 2224 aa9.73□□□□□ -0.85
CCDC40-207ENST00000572253 HEATR5AQ86XA9 2040 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms