RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 NDUFAB1O14561 156 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 DYNC1I1O14576 645 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 AIM2O14862 343 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 SERPINB7O75635 380 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 PTHP01270 115 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 GKN3PP0CG01 181 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 NQO1P15559 274 aaKnown RBP9.35□□□□□ -0.91
VPS53-207ENST00000570510 MFSD13AQ14CX5 517 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 SYPL1Q16563 259 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 DEFB112Q30KQ8 113 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 RUNDC3AQ59EK9 446 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 GCNT6Q5T4J0 391 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 MRPL2Q5T653 305 aaKnown RBP9.35□□□□□ -0.91
VPS53-207ENST00000570510 INTS11Q5TA45 600 aaKnown RBP9.35□□□□□ -0.91
VPS53-207ENST00000570510 LRRN1Q6UXK5 716 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 DLEU7Q6UYE1 221 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 ZNF620Q6ZNG0 422 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 C9orf139Q6ZV77 190 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 SERPINA11Q86U17 422 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 UEVLDQ8IX04 471 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 PCYOX1LQ8NBM8 494 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 OR8J3Q8NGG0 315 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 OR1J2Q8NGS2 313 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 RASSF5Q8WWW0 418 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 SGCDQ92629 289 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 FOXB1Q99853 325 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 TMEM120AQ9BXJ8 343 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 CHIAQ9BZP6 476 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 FGFR1OP2Q9NVK5 253 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 IL20RAQ9UHF4 553 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 NPTNQ9Y639 398 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 SOX21Q9Y651 276 aaPredicted RBP9.35□□□□□ -0.91
VPS53-207ENST00000570510 ARHGAP32A7KAX9 2087 aa9.35□□□□□ -0.91
VPS53-207ENST00000570510 C5orf63A6NC05 138 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 C5orf58C9J3I9 102 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 FARS2O95363 451 aaKnown RBP9.34□□□□□ -0.91
VPS53-207ENST00000570510 PATE4P0C8F1 98 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 CCL2P13500 99 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 ETFAP13804 333 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 SLC6A2P23975 617 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 SLC6A9P48067 706 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 UCP2P55851 309 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 RELBQ01201 579 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 PLP2Q04941 152 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 PMS2P3Q13401 168 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 MAPK11Q15759 364 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 TBC1D28Q2M2D7 210 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 COX20Q5RI15 118 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 GPR157Q5UAW9 335 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 TMEM53Q6P2H8 277 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 DHRS4L2Q6PKH6 230 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 SLC2A7Q6PXP3 512 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 BRD3OSQ6XYD6 125 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 NET1Q7Z628 596 aaPredicted RBP9.34□□□□□ -0.91
VPS53-207ENST00000570510 ARPINQ7Z6K5 226 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 C20orf196Q8IYI0 205 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 ANKFN1Q8N957 763 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 C11orf65Q8NCR3 313 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 HIPK4Q8NE63 616 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 OR10S1Q8NGN2 331 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 OR52P1PQ8NH57 321 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 STK35Q8TDR2 534 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 PPP1R14AQ96A00 147 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 TMEM19Q96HH6 336 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 CGREF1Q99674 301 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 EMC6Q9BV81 110 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 NSRP1Q9H0G5 558 aaKnown RBP9.34□□□□□ -0.91
VPS53-207ENST00000570510 C1orf198Q9H425 327 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 PATZ1Q9HBE1 687 aaKnown RBP9.34□□□□□ -0.91
VPS53-207ENST00000570510 NOX4Q9NPH5 578 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 SAR1AQ9NR31 198 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 SLC6A13Q9NSD5 602 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 RLIMQ9NVW2 624 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 GID8Q9NWU2 228 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 SLC25A37Q9NYZ2 338 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 VAPAQ9P0L0 249 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 KIF17Q9P2E2 1029 aa9.34□□□□□ -0.91
VPS53-207ENST00000570510 POLR3KQ9Y2Y1 108 aaPredicted RBP9.34□□□□□ -0.91
VPS53-207ENST00000570510 IQCMA0A1B0GVH7 501 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 OR2T1O43869 369 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 FMO6PO60774 539 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 UBOX5O94941 541 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 IGHV1-46P01743 117 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 PPIAL4GP0DN37 164 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 CCNOP22674 350 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 CD80P33681 288 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 KRTAP10-3P60369 221 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 RPL15P61313 204 aaKnown RBP9.33□□□□□ -0.92
VPS53-207ENST00000570510 ERVS71-1P61550 626 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 CDK6Q00534 326 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 GUCY1A3Q02108 690 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 PAX8Q06710 450 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 PAGE3Q5JUK9 113 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 PHYHD1Q5SRE7 291 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 SWT1Q5T5J6 900 aaKnown RBP9.33□□□□□ -0.92
VPS53-207ENST00000570510 ERICH5Q6P6B1 374 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 UNQ6126/PRO20091Q6UXV3 157 aa9.33□□□□□ -0.92
VPS53-207ENST00000570510 H1FNTQ75WM6 255 aaPredicted RBP9.33□□□□□ -0.92
VPS53-207ENST00000570510 PIWIL3Q7Z3Z3 882 aaKnown RBP9.33□□□□□ -0.92
VPS53-207ENST00000570510 DHDDSQ86SQ9 333 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms