RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 WWC2-AS2Q96NR7 200 aa9.79□□□□□ -0.84
CLK3-222ENST00000568232 FMO2Q99518 471 aa9.79□□□□□ -0.84
CLK3-222ENST00000568232 NUDT16L1Q9BRJ7 211 aaKnown RBP9.79□□□□□ -0.84
CLK3-222ENST00000568232 PCGF1Q9BSM1 259 aa9.79□□□□□ -0.84
CLK3-222ENST00000568232 LRMDAQ9H2I8 198 aa9.79□□□□□ -0.84
CLK3-222ENST00000568232 C1orf198Q9H425 327 aa9.79□□□□□ -0.84
CLK3-222ENST00000568232 C16orf95Q9H693 158 aa9.79□□□□□ -0.84
CLK3-222ENST00000568232 KLHL14Q9P2G3 628 aa9.79□□□□□ -0.84
CLK3-222ENST00000568232 PRDM4Q9UKN5 801 aa9.79□□□□□ -0.84
CLK3-222ENST00000568232 LRRN3E7EW58 273 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 TNFRSF13BO14836 293 aaPredicted RBP9.78□□□□□ -0.84
CLK3-222ENST00000568232 TRIM13O60858 407 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 PTHP01270 115 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 RPS2P15880 293 aaKnown RBP9.78□□□□□ -0.84
CLK3-222ENST00000568232 APLNRP35414 380 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 IER3P46695 156 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 BPIFB3P59826 476 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 PLP2Q04941 152 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 LARS2Q15031 903 aaKnown RBP9.78□□□□□ -0.84
CLK3-222ENST00000568232 SLC36A2Q495M3 483 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 RPS26P11Q5JNZ5 115 aaPredicted RBP9.78□□□□□ -0.84
CLK3-222ENST00000568232 ANXA8L1Q5VT79 327 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 MBNL2Q5VZF2 373 aaKnown RBP9.78□□□□□ -0.84
CLK3-222ENST00000568232 SLC16A14Q7RTX9 510 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 NET1Q7Z628 596 aaPredicted RBP9.78□□□□□ -0.84
CLK3-222ENST00000568232 KLBQ86Z14 1044 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 LRRC34Q8IZ02 419 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 LRRC18Q8N456 261 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 THOC1Q96FV9 657 aaKnown RBP9.78□□□□□ -0.84
CLK3-222ENST00000568232 SAMD8Q96LT4 415 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 MOGAT1Q96PD6 335 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 CDADC1Q9BWV3 514 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 TOR3AQ9H497 397 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 CYSLTR2Q9NS75 346 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 ARGLU1Q9NWB6 273 aaPredicted RBP9.78□□□□□ -0.84
CLK3-222ENST00000568232 GLTPQ9NZD2 209 aa9.78□□□□□ -0.84
CLK3-222ENST00000568232 PSMC3IPQ9P2W1 217 aaPredicted RBP9.78□□□□□ -0.84
CLK3-222ENST00000568232 TET2Q6N021 2002 aaPredicted RBP9.77□□□□□ -0.85
CLK3-222ENST00000568232 LOC100509620A0A075B734 347 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 CENPVL3A0A0U1RRI6 287 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 C11orf98E9PRG8 122 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 TMEM178BH3BS89 294 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 FARS2O95363 451 aaKnown RBP9.77□□□□□ -0.85
CLK3-222ENST00000568232 BGLAPP02818 100 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 MMP7P09237 267 aaPredicted RBP9.77□□□□□ -0.85
CLK3-222ENST00000568232 FUT4P22083 530 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 CRHR1P34998 444 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 LIPAP38571 399 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 CDKN2CP42773 168 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 CCT5P48643 541 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 EMX2Q04743 252 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 PUDPQ08623 228 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 CDK5R2Q13319 367 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 RUNDC3AQ59EK9 446 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 TTMPQ5BVD1 217 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 PABPC1L2AQ5JQF8 200 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 SPANXN4Q5MJ08 99 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 RNF220Q5VTB9 566 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 SLC27A4Q6P1M0 643 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 RFPL4BQ6ZWI9 263 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 OR2Z1Q8NG97 314 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 ABHD4Q8TB40 342 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 ITLN1Q8WWA0 313 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 PHF21AQ96BD5 680 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 TSPYL1Q9H0U9 437 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 TMEM165Q9HC07 324 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 NOP53Q9NZM5 478 aaKnown RBP9.77□□□□□ -0.85
CLK3-222ENST00000568232 RPS6KB2Q9UBS0 482 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 PPP1R3CQ9UQK1 317 aa9.77□□□□□ -0.85
CLK3-222ENST00000568232 A0A0U1RQK1 487 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 A0A1B0GWA3 101 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 C5orf49A4QMS7 147 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 CCDC154A6NI56 674 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 PLPP3O14495 311 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 BCHEP06276 602 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 ABHD2P08910 425 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 QDPRP09417 244 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 STOMP27105 288 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 HTR2AP28223 471 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 HSF2Q03933 536 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 BST1Q10588 318 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 HERPUD1Q15011 391 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 WHAMMP3Q1A5X7 153 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 Q6ZR03 302 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 Q6ZTK2 550 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 PXKQ7Z7A4 578 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 LYG1Q8N1E2 194 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 MUC20Q8N307 709 aaPredicted RBP9.76□□□□□ -0.85
CLK3-222ENST00000568232 HIPK4Q8NE63 616 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 ZNF420Q8TAQ5 688 aaPredicted RBP9.76□□□□□ -0.85
CLK3-222ENST00000568232 POM121L2Q96KW2 1035 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 PPP1R36Q96LQ0 422 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 SPATA9Q9BWV2 254 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 ASPNQ9BXN1 380 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 SLC19A3Q9BZV2 496 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 ACOXLQ9NUZ1 547 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 ASIC5Q9NY37 505 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 EIF3KQ9UBQ5 218 aaKnown RBP9.76□□□□□ -0.85
CLK3-222ENST00000568232 FOXJ3Q9UPW0 622 aa9.76□□□□□ -0.85
CLK3-222ENST00000568232 C22orf46C9J442 243 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms