RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SYT6Q5T7P8 510 aaPredicted RBP27.05■■□□□ 1.92
CTCF-203ENST00000566078 SNRNP40Q96DI7 357 aaKnown RBP27.05■■□□□ 1.92
CTCF-203ENST00000566078 PKD1L2Q7Z442 2459 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 A6NHS1 94 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 UPK3AO75631 287 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 LAP3P28838 519 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 ZNF133P52736 654 aaPredicted RBP27.05■■□□□ 1.92
CTCF-203ENST00000566078 WNT4P56705 351 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 ADAM8P78325 824 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 HSF2Q03933 536 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 DOC2BQ14184 412 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 GALEQ14376 348 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 C10orf128Q5T292 105 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 SSX6Q7RTT6 188 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 CDC20BQ86Y33 519 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 OR13F1Q8NGS4 319 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 PARPBPQ9NWS1 579 aa27.05■■□□□ 1.92
CTCF-203ENST00000566078 SEC14L2O76054 403 aa27.04■■□□□ 1.92
CTCF-203ENST00000566078 TPOP07202 933 aa27.04■■□□□ 1.92
CTCF-203ENST00000566078 PSKH1P11801 424 aa27.04■■□□□ 1.92
CTCF-203ENST00000566078 RPS27P42677 84 aaKnown RBP27.04■■□□□ 1.92
CTCF-203ENST00000566078 TIGD6Q17RP2 521 aa27.04■■□□□ 1.92
CTCF-203ENST00000566078 GPR137CQ8N3F9 429 aa27.04■■□□□ 1.92
CTCF-203ENST00000566078 SLX1AQ9BQ83 275 aa27.04■■□□□ 1.92
CTCF-203ENST00000566078 YIPF3Q9GZM5 350 aa27.04■■□□□ 1.92
CTCF-203ENST00000566078 SEC61A2Q9H9S3 476 aa27.04■■□□□ 1.92
CTCF-203ENST00000566078 MAP1BP46821 2468 aaKnown RBP27.03■■□□□ 1.92
CTCF-203ENST00000566078 ZGRF1Q86YA3 2104 aa27.03■■□□□ 1.92
CTCF-203ENST00000566078 ZNF670-ZNF695F2Z2N8 137 aa27.03■■□□□ 1.92
CTCF-203ENST00000566078 HSMCR30P0CW71 290 aa27.03■■□□□ 1.92
CTCF-203ENST00000566078 ENTPD1P49961 510 aa27.03■■□□□ 1.92
CTCF-203ENST00000566078 SPHARQ15513 63 aa27.03■■□□□ 1.92
CTCF-203ENST00000566078 DPY19L4Q7Z388 723 aa27.03■■□□□ 1.92
CTCF-203ENST00000566078 OR52N1Q8NH53 320 aa27.03■■□□□ 1.92
CTCF-203ENST00000566078 ALKBH3Q96Q83 286 aaPredicted RBP27.03■■□□□ 1.92
CTCF-203ENST00000566078 SLCO5A1Q9H2Y9 848 aa27.03■■□□□ 1.92
CTCF-203ENST00000566078 GP6Q9HCN6 339 aa27.03■■□□□ 1.92
CTCF-203ENST00000566078 B3GAT2Q9NPZ5 323 aa27.03■■□□□ 1.92
CTCF-203ENST00000566078 CAB39Q9Y376 341 aaPredicted RBP27.03■■□□□ 1.92
CTCF-203ENST00000566078 ACACBO00763 2458 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 ZNF593O00488 134 aaPredicted RBP27.02■■□□□ 1.92
CTCF-203ENST00000566078 SPARCP09486 303 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 ZNF823P16415 610 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 AGTR1P30556 359 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 CDAP32320 146 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 RPTNQ6XPR3 784 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 TMPRSS11AQ6ZMR5 421 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 GATAD2BQ8WXI9 593 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 C11orf40Q8WZ69 217 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 GMPPAQ96IJ6 420 aaPredicted RBP27.02■■□□□ 1.92
CTCF-203ENST00000566078 COG8Q96MW5 612 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 ASF1BQ9NVP2 202 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 LAMP5Q9UJQ1 280 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 KLHDC2Q9Y2U9 406 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 UGT2A1Q9Y4X1 527 aa27.02■■□□□ 1.92
CTCF-203ENST00000566078 DHHO43323 396 aa27.01■■□□□ 1.92
CTCF-203ENST00000566078 HRGP04196 525 aa27.01■■□□□ 1.92
CTCF-203ENST00000566078 EDNRAP25101 427 aa27.01■■□□□ 1.92
CTCF-203ENST00000566078 ZNF322Q6U7Q0 402 aaPredicted RBP27.01■■□□□ 1.92
CTCF-203ENST00000566078 NUFIP2Q7Z417 695 aaKnown RBP27.01■■□□□ 1.92
CTCF-203ENST00000566078 CD163Q86VB7 1156 aa27.01■■□□□ 1.92
CTCF-203ENST00000566078 OR10H5Q8NGA6 315 aa27.01■■□□□ 1.92
CTCF-203ENST00000566078 SPRYD4Q8WW59 207 aaPredicted RBP27.01■■□□□ 1.92
CTCF-203ENST00000566078 WNT2BQ93097 391 aa27.01■■□□□ 1.92
CTCF-203ENST00000566078 MNTQ99583 582 aa27.01■■□□□ 1.92
CTCF-203ENST00000566078 RBM24Q9BX46 236 aaKnown RBP27.01■■□□□ 1.92
CTCF-203ENST00000566078 GLRX2Q9NS18 164 aa27.01■■□□□ 1.92
CTCF-203ENST00000566078 KCNG2Q9UJ96 466 aa27.01■■□□□ 1.92
CTCF-203ENST00000566078 SS18L1O75177 396 aaPredicted RBP27.01■■□□□ 1.91
CTCF-203ENST00000566078 SFTPCP11686 197 aa27.01■■□□□ 1.91
CTCF-203ENST00000566078 ABOP16442 354 aa27.01■■□□□ 1.91
CTCF-203ENST00000566078 ZNF84P51523 738 aa27.01■■□□□ 1.91
CTCF-203ENST00000566078 SF3B4Q15427 424 aaKnown RBP eCLIP27.01■■□□□ 1.91
CTCF-203ENST00000566078 FAM57AQ8TBR7 257 aa27.01■■□□□ 1.91
CTCF-203ENST00000566078 MGLLQ99685 303 aa27.01■■□□□ 1.91
CTCF-203ENST00000566078 ISG20L2Q9H9L3 353 aaKnown RBP27.01■■□□□ 1.91
CTCF-203ENST00000566078 SCG5P05408 212 aa27■■□□□ 1.91
CTCF-203ENST00000566078 TTKP33981 857 aa27■■□□□ 1.91
CTCF-203ENST00000566078 ARMCX4Q5H9R4 360 aa27■■□□□ 1.91
CTCF-203ENST00000566078 NSUN5P2Q63ZY6 315 aa27■■□□□ 1.91
CTCF-203ENST00000566078 C9orf106Q8NAJ2 232 aa27■■□□□ 1.91
CTCF-203ENST00000566078 ZNF485Q8NCK3 441 aa27■■□□□ 1.91
CTCF-203ENST00000566078 OTOSQ8NHW6 89 aa27■■□□□ 1.91
CTCF-203ENST00000566078 HTRA1Q92743 480 aa27■■□□□ 1.91
CTCF-203ENST00000566078 APH1AQ96BI3 265 aa27■■□□□ 1.91
CTCF-203ENST00000566078 CRLF2Q9HC73 371 aa27■■□□□ 1.91
CTCF-203ENST00000566078 TMEM14AQ9Y6G1 99 aa27■■□□□ 1.91
CTCF-203ENST00000566078 WDR1O75083 606 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 IGHV3-9P01782 118 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 GABRA1P14867 456 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 ACTA2P62736 377 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 ACTG2P63267 376 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 LY6DQ14210 128 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 TSPO2Q5TGU0 170 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 LINGO2Q7L985 606 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 C4orf36Q96KX1 117 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 OPALINQ96PE5 141 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 LINC00470Q9BZP3 86 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 EMC7Q9NPA0 242 aa26.99■■□□□ 1.91
CTCF-203ENST00000566078 NCOA6Q14686 2063 aaPredicted RBP26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms