RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MMEL1Q495T6 779 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 AGBL2Q5U5Z8 902 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 USP43Q70EL4 1123 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 NKAIN4Q8IVV8 208 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 ASB10Q8WXI3 467 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 RAB39BQ96DA2 213 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 SEPHS2Q99611 448 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 PCDHAC1Q9H158 963 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 RABEP2Q9H5N1 569 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 NANOGQ9H9S0 305 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 SAP30LQ9HAJ7 183 aa14.34□□□□□ -0.11
CLN3-211ENST00000564091 IGKV1D-43A0A0B4J1Z2 117 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 A0A0G2JMP0 313 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 A0A0X1KG70 313 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 CLDN25C9JDP6 229 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 ANGPT2O15123 496 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 WIPF1O43516 503 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 IGHV3-13P01766 116 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 MT-ND1P03886 318 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 EGR1P18146 543 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 TNFRSF1BP20333 461 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 PCGF2P35227 344 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 MPV17P39210 176 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 WNT5AP41221 380 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 ZNF81P51508 661 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 ARFIP2P53365 341 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 HNRNPA0Q13151 305 aaKnown RBP14.33□□□□□ -0.12
CLN3-211ENST00000564091 MOGQ16653 247 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 HFEQ30201 348 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 TMEM255AQ5JRV8 349 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 THEM4Q5T1C6 240 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 C1QL2Q7Z5L3 287 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 ZNF101Q8IZC7 436 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 OR4M2Q8NGB6 313 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 AKR7LQ8NHP1 331 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 MOSPD2Q8NHP6 518 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 TMEM255BQ8WV15 326 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 CCL17Q92583 94 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 NSMAFQ92636 917 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 SLC6A7Q99884 636 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 SIAEQ9HAT2 523 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 INIPQ9NRY2 104 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 C20orf141Q9NUB4 165 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 SH3GLB1Q9Y371 365 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 UGT2A1Q9Y4X1 527 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 TRRAPQ9Y4A5 3859 aa14.33□□□□□ -0.12
CLN3-211ENST00000564091 SHOX2O60902 331 aaPredicted RBP14.32□□□□□ -0.12
CLN3-211ENST00000564091 OR7A10O76100 309 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 IGHV1-46P01743 117 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 MT-ND5P03915 603 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 ZNF32P17041 273 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 STOMP27105 288 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 GZMMP51124 257 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 FMODQ06828 376 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 SGCAQ16586 387 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 C10orf128Q5T292 105 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 ARMC4Q5T2S8 1044 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 DCAF12L2Q5VW00 463 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 SLC30A8Q8IWU4 369 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 TEX29Q8N6K0 151 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 DYDC1Q8WWB3 177 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 IPCEF1Q8WWN9 437 aaPredicted RBP14.32□□□□□ -0.12
CLN3-211ENST00000564091 HDAC2Q92769 488 aaKnown RBP14.32□□□□□ -0.12
CLN3-211ENST00000564091 RAB1CQ92928 201 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 NABP1Q96AH0 204 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 SGTBQ96EQ0 304 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 TIMD4Q96H15 378 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 RBM4Q9BWF3 364 aaKnown RBP14.32□□□□□ -0.12
CLN3-211ENST00000564091 KCNN2Q9H2S1 579 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 C7orf69Q9H7B7 122 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 CCNB1IP1Q9NPC3 277 aa14.32□□□□□ -0.12
CLN3-211ENST00000564091 LOC100509620A0A075B734 347 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 C5orf49A4QMS7 147 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 MGRN1O60291 552 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 GCH1P30793 250 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 DAP3P51398 398 aaKnown RBP14.31□□□□□ -0.12
CLN3-211ENST00000564091 MMP15P51511 669 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 ZNF133P52736 654 aaPredicted RBP14.31□□□□□ -0.12
CLN3-211ENST00000564091 MRPS34P82930 218 aaKnown RBP14.31□□□□□ -0.12
CLN3-211ENST00000564091 PSG4Q00888 419 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 PIN1Q13526 163 aaPredicted RBP14.31□□□□□ -0.12
CLN3-211ENST00000564091 LAPTM4AQ15012 233 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 VMACQ2NL98 169 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 ZNF718Q3SXZ3 478 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 INTS11Q5TA45 600 aaKnown RBP14.31□□□□□ -0.12
CLN3-211ENST00000564091 NANPQ8TBE9 248 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 SLC25A40Q8TBP6 338 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 C22orf15Q8WYQ4 148 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 NMD3Q96D46 503 aaKnown RBP14.31□□□□□ -0.12
CLN3-211ENST00000564091 ELMOD3Q96FG2 381 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 MARS2Q96GW9 593 aaKnown RBP14.31□□□□□ -0.12
CLN3-211ENST00000564091 POM121L2Q96KW2 1035 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 JMJD8Q96S16 334 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 GAL3ST1Q99999 423 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 OR2J1Q9GZK6 312 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 ESM1Q9NQ30 184 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 UBAP1Q9NZ09 502 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 EIF3KQ9UBQ5 218 aaKnown RBP14.31□□□□□ -0.12
CLN3-211ENST00000564091 OPN4Q9UHM6 478 aa14.31□□□□□ -0.12
CLN3-211ENST00000564091 ISPDA4D126 451 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms