RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 ATG101Q9BSB4 218 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 DOCK2Q92608 1830 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 A0A0U1RQK1 487 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 SAP18O00422 153 aaKnown RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 PRICKLE3O43900 615 aaPredicted RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 PIGPP57054 158 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 HLA-DRB3P79483 266 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 TARBP2Q15633 366 aaKnown RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 HLA-BQ31612 363 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 C2orf76Q3KRA6 126 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 LAMTOR1Q6IAA8 161 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 CALHM3Q86XJ0 350 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 RBM18Q96H35 190 aaKnown RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 PCED1BQ96HM7 432 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 CHST11Q9NPF2 352 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 MARCH4Q9P2E8 410 aaPredicted RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 ZFP92A6NM28 416 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 CEBPZOSA8MTT3 80 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 WNT1P04628 370 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 AKR1C3P42330 323 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 TAS2R38P59533 333 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 SLC14A1Q13336 389 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 ZSCAN4Q8NAM6 433 aaPredicted RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 ALKBH7Q9BT30 221 aaPredicted RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 TTTY10Q9BZA0 68 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 NOX4Q9NPH5 578 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 LRIT1Q9P2V4 623 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 TNFSF18Q9UNG2 199 aa5.77□□□□□ -1.49
CLK3-212ENST00000563418 MARF1Q9Y4F3 1742 aaKnown RBP5.77□□□□□ -1.49
CLK3-212ENST00000563418 WDR1O75083 606 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 CHRM2P08172 466 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 PRDX3P30048 256 aaKnown RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 POU3F4P49335 361 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 SKP2Q13309 424 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 ELAVL1Q15717 326 aaKnown RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 ZNF528Q3MIS6 628 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 STUMQ69YW2 141 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 ZNF660Q6AZW8 331 aaPredicted RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 RNF165Q6ZSG1 346 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 TMEM183AQ8IXX5 376 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 EMG1Q92979 244 aaKnown RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 ANGPTL4Q9BY76 406 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 AUNIPQ9H7T9 357 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 COLEC10Q9Y6Z7 277 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 H2BFMP0C1H6 154 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 BLKP51451 505 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 FAM182AQ5T1J6 154 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 TMEM182Q6ZP80 229 aaPredicted RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 ZNF467Q7Z7K2 595 aaPredicted RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 ARRDC4Q8NCT1 418 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 TMEM239Q8WW34 195 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 SCN8AQ9UQD0 1980 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 CASTOR2A6NHX0 329 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 NT5EP21589 574 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 DOC2BQ14184 412 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 PRSS54Q6PEW0 395 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 LRP10Q7Z4F1 713 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 COMMD6Q7Z4G1 85 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 ZNF100Q8IYN0 542 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 OR9A2Q8NGT5 310 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 OR6X1Q8NH79 312 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 PIK3IP1Q96FE7 263 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 APIPQ96GX9 242 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 C1orf198Q9H425 327 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 B3GALT1Q9Y5Z6 326 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 KCNMB2Q9Y691 235 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 MEIS3P1A6NDR6 274 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 SOWAHBA6NEL2 793 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 KLK3P07288 261 aaPredicted RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 PXNP49023 591 aaPredicted RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 ZNF133P52736 654 aaPredicted RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 TMPPEQ6ZT21 453 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 SLC35E3Q7Z769 313 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 SECTM1Q8WVN6 248 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 NEURL3Q96EH8 262 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 SPANXA1Q9NS26 97 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 SIRT3Q9NTG7 399 aaPredicted RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 MSRAQ9UJ68 235 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 SRPK3Q9UPE1 567 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 ZNF320A2RRD8 509 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 DUS4LO95620 317 aaKnown RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 SUOXP51687 545 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 LILRA4P59901 499 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 C12orf73Q69YU5 71 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 HIST1H2BAQ96A08 127 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 PINX1Q96BK5 328 aaKnown RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 SHDQ96IW2 340 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 MS4A4EQ96PG1 132 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 RHNO1Q9BSD3 238 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 ZNF331Q9NQX6 463 aaPredicted RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 LHX6Q9UPM6 363 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 ARAP2Q8WZ64 1704 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 ANKRD20A5PA0PJZ0 165 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 PDHXO00330 501 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 OR7C2O60412 319 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 RPS26P11Q5JNZ5 115 aaPredicted RBP5.76□□□□□ -1.49
CLK3-212ENST00000563418 LGI3Q8N145 548 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 CSNK1A1LQ8N752 337 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 SH3RF2Q8TEC5 729 aa5.76□□□□□ -1.49
CLK3-212ENST00000563418 TMEM106AQ96A25 262 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms