RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 BEX2Q9BXY8 128 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 PLA2G12AQ9BZM1 189 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 BEX1Q9HBH7 125 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 KCNJ16Q9NPI9 418 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 FLNBO75369 2602 aaKnown RBP8.31□□□□□ -1.08
VPS39-205ENST00000562258 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 ZNF26P17031 533 aaPredicted RBP8.31□□□□□ -1.08
VPS39-205ENST00000562258 LIPNQ5VXI9 398 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 OR2A2Q6IF42 318 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 PLET1Q6UQ28 207 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 ARMC10Q8N2F6 343 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 PIGTQ969N2 578 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 TMEM106AQ96A25 262 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 LRFN5Q96NI6 719 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 SIGLEC12Q96PQ1 595 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 TXNIPQ9H3M7 391 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 SHANK1Q9Y566 2161 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 PRSS37A4D1T9 235 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 OR7C1O76099 320 aaPredicted RBP8.31□□□□□ -1.08
VPS39-205ENST00000562258 RAB40ALP0C0E4 278 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 FRKP42685 505 aaPredicted RBP8.31□□□□□ -1.08
VPS39-205ENST00000562258 PITPNBP48739 271 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 MTCP1P56278 107 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 CLDN12P56749 244 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 ARPC4P59998 168 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 KEAP1Q14145 624 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 TBC1D28Q2M2D7 210 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 APOOLQ6UXV4 268 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 MFSD8Q8NHS3 518 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 TNFAIP8L1Q8WVP5 186 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 NINJ1Q92982 152 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 C12orf43Q96C57 262 aaKnown RBP8.31□□□□□ -1.08
VPS39-205ENST00000562258 S100A16Q96FQ6 103 aaKnown RBP8.31□□□□□ -1.08
VPS39-205ENST00000562258 SPACA5Q96QH8 159 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 FOXB1Q99853 325 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 URM1Q9BTM9 101 aaKnown RBP8.31□□□□□ -1.08
VPS39-205ENST00000562258 AICDAQ9GZX7 198 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 OR51E2Q9H255 320 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 SLCO5A1Q9H2Y9 848 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 NARFLQ9H6Q4 476 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 SYNPO2LQ9H987 977 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 PCDHB16Q9NRJ7 776 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 CLEC2DQ9UHP7 191 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 SPI1P17947 270 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 CBX5P45973 191 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 TSC22D1Q15714 1073 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 MTFR2Q6P444 385 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 PAQR6Q6TCH4 344 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 PRSS48Q7RTY5 328 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 ENTHD1Q8IYW4 607 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 OR4D11Q8NGI4 311 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 LIPHQ8WWY8 451 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 GHSRQ92847 366 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 HRASLS5Q96KN8 279 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 ANKRD60Q9BZ19 345 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 DECR2Q9NUI1 292 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 GLTPQ9NZD2 209 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 KCNG2Q9UJ96 466 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 METTL15A6NJ78 407 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 TGFBR3LH3BV60 316 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 FAUP35544 74 aaKnown RBP8.3□□□□□ -1.08
VPS39-205ENST00000562258 GTF3C1Q12789 2109 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 ZNF846Q147U1 533 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 ZNF141Q15928 474 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 NXNL2Q5VZ03 156 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 USP51Q70EK9 711 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 ZNF367Q7RTV3 350 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 TMED4Q7Z7H5 227 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 MKXQ8IYA7 352 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 MARVELD2Q8N4S9 558 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 APCDD1LQ8NCL9 501 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 FAM71CQ8NEG0 241 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 STK35Q8TDR2 534 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 SIP14410 1827 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 ANKHD1Q8IWZ3 2542 aaKnown RBP8.3□□□□□ -1.08
VPS39-205ENST00000562258 TLN2Q9Y4G6 2542 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 A0A0J9YW62 118 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 FITM1A5D6W6 292 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 GLCEO94923 617 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 CAPNS1P04632 268 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 SERPINA2P20848 420 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 GABRR1P24046 479 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 HTR2AP28223 471 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 LCN1P31025 176 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 RAC3P60763 192 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 LIN54Q6MZP7 749 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 THSD4Q6ZMP0 1018 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 ADGRG3Q86Y34 549 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 OR5D14Q8NGL3 314 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 OR1J2Q8NGS2 313 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 ELP5Q8TE02 316 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 C7orf34Q96L11 122 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 ZNF700Q9H0M5 742 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 SIRT5Q9NXA8 310 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 RHBDD3Q9Y3P4 386 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 HSPE1-MOB4S4R3N1 261 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 FANCMQ8IYD8 2048 aa8.3□□□□□ -1.08
VPS39-205ENST00000562258 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 CDC42EP2O14613 210 aa8.29□□□□□ -1.08
VPS39-205ENST00000562258 SBK2P0C263 348 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms