RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 RAB3AP20336 220 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 F8A1P23610 371 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 HLA-DMAP28067 261 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 CDH5P33151 784 aaPredicted RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 SERPINB5P36952 375 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 HTR2BP41595 481 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 SERPINB9P50453 376 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 SERPINH1P50454 418 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 UGT2B15P54855 530 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 DEFA1P59665 94 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 DEFA3P59666 94 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 EIF3EP60228 445 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 VBP1P61758 197 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 HERV-K104P63124 156 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ADARB1P78563 741 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 MRPS22P82650 360 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 FADDQ13158 208 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 NME3Q13232 169 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 AQP6Q13520 282 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 MESDQ14696 234 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 CHI3L2Q15782 390 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 STXBP2Q15833 593 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ATP6AP1Q15904 470 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 PSMD5Q16401 504 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 Q3ZCU0 254 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 PARP15Q460N3 678 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 AARDQ4LEZ3 155 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 TSPO2Q5TGU0 170 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF57Q68EA5 555 aaPredicted RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 XAF1Q6GPH4 301 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 EPGNQ6UW88 154 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ARSKQ6UWY0 536 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 GDPD3Q7L5L3 318 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 CATSPER4Q7RTX7 472 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 PRSS42Q7Z5A4 293 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 RABEPKQ7Z6M1 372 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 NKAIN4Q8IVV8 208 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 KATNAL2Q8IYT4 538 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 BATF2Q8N1L9 274 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 CLEC4FQ8N1N0 589 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 LIX1Q8N485 282 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 DHRSXQ8N5I4 330 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 RNF182Q8N6D2 247 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 CCNYL1Q8N7R7 359 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF680Q8NEM1 530 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 OR10T2Q8NGX3 314 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 LRRC20Q8TCA0 184 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 SLC22A8Q8TCC7 542 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 DYNC2LI1Q8TCX1 351 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ZFP90Q8TF47 636 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 DNAJA4Q8WW22 397 aaPredicted RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 C1orf54Q8WWF1 131 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 GTF2H4Q92759 462 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 UFD1Q92890 307 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 RPL3LQ92901 407 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 FAM46BQ96A09 425 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 PPWD1Q96BP3 646 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 LRRC39Q96DD0 335 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 HSFY1Q96LI6 401 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 NOL4LQ96MY1 436 aaPredicted RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 RDH12Q96NR8 316 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 RBM14Q96PK6 669 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 APOL4Q9BPW4 351 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 PELOQ9BRX2 385 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 MTG1Q9BT17 334 aaPredicted RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ZSCAN5AQ9BUG6 496 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 CCDC32Q9BV29 185 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 NAA50Q9GZZ1 169 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 LHX5Q9H2C1 402 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 DSN1Q9H410 356 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF385DQ9H6B1 395 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 LRRC40Q9H9A6 602 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ZFP14Q9HCL3 533 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 DMAC2Q9NW81 257 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 HPF1Q9NWY4 346 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 PAQR5Q9NXK6 330 aaPredicted RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 IL37Q9NZH6 218 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 CCDC59Q9P031 241 aaKnown RBP2.29□□□□□ -2.04
VPS13C-208ENST00000559119 CD300AQ9UGN4 299 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF639Q9UID6 485 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF229Q9UJW7 825 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 TRAPPC4Q9Y296 219 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 ASB4Q9Y574 426 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 SLCO1B1Q9Y6L6 691 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 CDH10Q9Y6N8 788 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 MYH4Q9Y623 1939 aa2.29□□□□□ -2.04
VPS13C-208ENST00000559119 PKD1L3Q7Z443 1732 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 FMN2Q9NZ56 1722 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ADAMTSL3P82987 1691 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 TOPAZ1Q8N9V7 1692 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ADAMTS7Q9UKP4 1686 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 RIC1Q4ADV7 1423 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 TRAV6A0A075B6T7 132 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 A0A0X1KG70 313 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 PNMA8CA0A1B0GUJ8 204 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 A0A1W2PRG6 482 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 SMIM30A4D0T7 59 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 TMEM150BA6NC51 233 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF98A6NK75 572 aa2.28□□□□□ -2.04
VPS13C-208ENST00000559119 CLDN24A6NM45 220 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms