RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-208	ENST00000558155	DHH	O43323	396 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	PIP5K1C	O60331	668 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	HPR	P00739	348 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	CD55	P08174	381 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	WNT2	P09544	360 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	HLA-DOB	P13765	273 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	ECHS1	P30084	290 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	MDH2	P40926	338 aa	Known RBP	4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	MMP15	P51511	669 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	BID	P55957	195 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	KRTAP10-3	P60369	221 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	BTG1	P62324	171 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	TNFAIP6	P98066	277 aa	Predicted RBP	4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	PUDP	Q08623	228 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	FAM189A2	Q15884	450 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	BEAN1	Q3B7T3	259 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	NRN1L	Q496H8	165 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	ALG10B	Q5I7T1	473 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	SPANXN4	Q5MJ08	99 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	VAX1	Q5SQQ9	334 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	GPR157	Q5UAW9	335 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	MBNL2	Q5VZF2	373 aa	Known RBP	4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	FAM91A1	Q658Y4	838 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	ULK3	Q6PHR2	472 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	LRFN4	Q6PJG9	635 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	NHLRC1	Q6VVB1	395 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155		Q6ZPA2	131 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	SERPINA11	Q86U17	422 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	PTOV1	Q86YD1	416 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	IFT20	Q8IY31	132 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	C10orf53	Q8N6V4	93 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	LSMEM1	Q8N8F7	131 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	RBM15B	Q8NDT2	890 aa	Known RBP	4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	MNS1	Q8NEH6	495 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	OR6X1	Q8NH79	312 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	LINC01006	Q8NI28	216 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	MRAP	Q8TCY5	172 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	KLF14	Q8TD94	323 aa	Predicted RBP	4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	SLC38A5	Q8WUX1	472 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	SSMEM1	Q8WWF3	244 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	DYRK2	Q92630	601 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	TMEM54	Q969K7	222 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	ZNF566	Q969W8	418 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	PPP1R14A	Q96A00	147 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	SLC47A1	Q96FL8	570 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	MARS2	Q96GW9	593 aa	Known RBP	4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	SLC41A3	Q96GZ6	507 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	MAGEB18	Q96M61	343 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	CCDC115	Q96NT0	180 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	OR52E6	Q96RD3	313 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	MYCBP	Q99417	103 aa	Predicted RBP	4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	SSBP3	Q9BWW4	388 aa	Predicted RBP	4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	CHIA	Q9BZP6	476 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	AKTIP	Q9H8T0	292 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	MARCH7	Q9H992	704 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	PPCS	Q9HAB8	311 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	TMEM27	Q9HBJ8	222 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	TMEM38B	Q9NVV0	291 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	THUMPD1	Q9NXG2	353 aa	Known RBP	4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	MRPL39	Q9NYK5	338 aa	Known RBP	4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	KIF17	Q9P2E2	1029 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	KLHL14	Q9P2G3	628 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	MIOX	Q9UGB7	285 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	TRIM33	Q9UPN9	1127 aa		4.35	□□□□□ -1.71
SPG11-208	ENST00000558155	PLXNB1	O43157	2135 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	TRAV40	A0A0B4J280	105 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	IGHV2-70D	A0A0C4DH43	119 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	MDFIC2	A0A1B0GVS7	189 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155		A0A1B0GWA3	101 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	ZSCAN5B	A6NJL1	495 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155		E9PBE3	544 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	C11orf98	E9PRG8	122 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155		F5H0A9	414 aa	Predicted RBP	4.34	□□□□□ -1.71
SPG11-208	ENST00000558155		G3V4G9	280 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155		H3BSA7	217 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	IFNL4	K9M1U5	179 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	SERPINI2	O75830	405 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	TSPAN15	O95858	294 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	C1QC	P02747	245 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	BGLAP	P02818	100 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	HIST1H2AB	P04908	130 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	BCHE	P06276	602 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	QDPR	P09417	244 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	ADORA3	P0DMS8	318 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	LBP	P18428	481 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	STOM	P27105	288 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	MPV17	P39210	176 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	CRAT	P43155	626 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	GDI2	P50395	445 aa	Known RBP	4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	ZNF84	P51523	738 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	ARHGDIA	P52565	204 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	PROK1	P58294	105 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	DSTN	P60981	165 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	SEC61A1	P61619	476 aa	Known RBP	4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	GNB2	P62879	340 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	HOXC5	Q00444	222 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	PAX2	Q02962	417 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	CDK5R2	Q13319	367 aa		4.34	□□□□□ -1.71
SPG11-208	ENST00000558155	MAPK11	Q15759	364 aa		4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 35 ms