RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 EXD3Q8N9H8 876 aa11.39□□□□□ -0.59
SHMT2-229ENST00000557348 PHYHIPQ92561 330 aa11.39□□□□□ -0.59
SHMT2-229ENST00000557348 ZNF524Q96C55 264 aa11.39□□□□□ -0.59
SHMT2-229ENST00000557348 C4orf36Q96KX1 117 aa11.39□□□□□ -0.59
SHMT2-229ENST00000557348 TBX5Q99593 518 aa11.39□□□□□ -0.59
SHMT2-229ENST00000557348 GHITMQ9H3K2 345 aa11.39□□□□□ -0.59
SHMT2-229ENST00000557348 ZNF160Q9HCG1 818 aa11.39□□□□□ -0.59
SHMT2-229ENST00000557348 CHST11Q9NPF2 352 aa11.39□□□□□ -0.59
SHMT2-229ENST00000557348 VSX1Q9NZR4 365 aaPredicted RBP11.39□□□□□ -0.59
SHMT2-229ENST00000557348 FBXL4Q9UKA2 621 aa11.39□□□□□ -0.59
SHMT2-229ENST00000557348 ZNF346Q9UL40 294 aaKnown RBP11.39□□□□□ -0.59
SHMT2-229ENST00000557348 NPTNQ9Y639 398 aa11.39□□□□□ -0.59
SHMT2-229ENST00000557348 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-229ENST00000557348 A0A1W2PNV4 684 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 J3QLW9 94 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 CASKO14936 926 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 AKR7A2O43488 359 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 SERPINA7P05543 415 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 ZNF19P17023 458 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 TGM4P49221 684 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 FABP5Q01469 135 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 NHLH1Q02575 133 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 ACKR1Q16570 336 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 CCDC157Q569K6 752 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 LINC01590Q5TEZ4 76 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 PYHIN1Q6K0P9 492 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 RPL22L1Q6P5R6 122 aaKnown RBP11.38□□□□□ -0.59
SHMT2-229ENST00000557348 B3GLCTQ6Y288 498 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 PPP1R32Q7Z5V6 425 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 TPRA1Q86W33 373 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 OR8H3Q8N146 312 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 SUMF1Q8NBK3 374 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 ZNF417Q8TAU3 575 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 ZNF519Q8TB69 540 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 ASB17Q8WXJ9 295 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 TMEM203Q969S6 136 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 KLHL15Q96M94 604 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 CMTM3Q96MX0 182 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 ZNF587Q96SQ5 575 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-229ENST00000557348 ATF6BQ99941 703 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 KLHDC3Q9BQ90 382 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 TMED9Q9BVK6 235 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 SLC6A15Q9H2J7 730 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 HEXA-AS1Q9H8Q6 139 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 ISG20L2Q9H9L3 353 aaKnown RBP11.38□□□□□ -0.59
SHMT2-229ENST00000557348 CYSLTR2Q9NS75 346 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 MGAT4AQ9UM21 535 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 VDAC3Q9Y277 283 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 HDGFL3Q9Y3E1 203 aa11.38□□□□□ -0.59
SHMT2-229ENST00000557348 COL27A1Q8IZC6 1860 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-229ENST00000557348 A0A1B0GW55 424 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 RPS10-NUDT3A0A1W2PQS6 291 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 PRSS37A4D1T9 235 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 NPIPA5E9PKD4 350 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 OGG1O15527 345 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 NDUFA2O43678 99 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 DUX4L2P0CJ85 424 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 DUX4L3P0CJ86 424 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 DUX4L4P0CJ87 422 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 DUX4L5P0CJ88 424 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 DUX4L6P0CJ89 424 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 DUX4L7P0CJ90 424 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 TFPIP10646 304 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 AHCYP23526 432 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 APEX1P27695 318 aaKnown RBP11.37□□□□□ -0.59
SHMT2-229ENST00000557348 CD82P27701 267 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 ACVR1BP36896 505 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 CD79BP40259 229 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 DSCR4P56555 118 aaPredicted RBP11.37□□□□□ -0.59
SHMT2-229ENST00000557348 PITPNAQ00169 270 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 DMKNQ6E0U4 476 aaPredicted RBP11.37□□□□□ -0.59
SHMT2-229ENST00000557348 OR5M10Q6IEU7 315 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 H3F3CQ6NXT2 135 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 ARSKQ6UWY0 536 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 COMMD7Q86VX2 200 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 MARCH9Q86YJ5 346 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 TEX19Q8NA77 164 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 OR4M2Q8NGB6 313 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 OR5T2Q8NGG2 359 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 NEIL3Q8TAT5 605 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 THRSPQ92748 146 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 RBPMSQ93062 196 aaKnown RBP11.37□□□□□ -0.59
SHMT2-229ENST00000557348 RFT1Q96AA3 541 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 SMIM19Q96E16 107 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 TRMT61AQ96FX7 289 aaKnown RBP11.37□□□□□ -0.59
SHMT2-229ENST00000557348 TMEM41AQ96HV5 264 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 TIMP4Q99727 224 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 TM9SF2Q99805 663 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 BEX2Q9BXY8 128 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 OR11A1Q9GZK7 315 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 PPIL3Q9H2H8 161 aaKnown RBP11.37□□□□□ -0.59
SHMT2-229ENST00000557348 CDCP1Q9H5V8 836 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 ZFP64Q9NPA5 681 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 DUX4Q9UBX2 424 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 NPIPA1Q9UND3 350 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 EXPH5Q8NEV8 1989 aa11.37□□□□□ -0.59
SHMT2-229ENST00000557348 MEIKINA0A087WXM9 373 aa11.36□□□□□ -0.59
SHMT2-229ENST00000557348 LIPT2A6NK58 231 aa11.36□□□□□ -0.59
SHMT2-229ENST00000557348 C11orf98E9PRG8 122 aa11.36□□□□□ -0.59
SHMT2-229ENST00000557348 GATBO75879 557 aaKnown RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms