RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SGCAQ16586 387 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 MEP1BQ16820 701 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 TBRG1Q3YBR2 411 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 ANKRD16Q6P6B7 361 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 UGT2A3Q6UWM9 527 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 LYPD4Q6UWN0 246 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 SEZ6L2Q6UXD5 910 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 ZNF813Q6ZN06 617 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 FOXL2NBQ6ZUU3 175 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 SKA3Q8IX90 412 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 SLC22A24Q8N4F4 322 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 C1orf162Q8NEQ5 155 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-227ENST00000557269 STEAP2Q8NFT2 490 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 OR52N5Q8NH56 324 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 FNDC8Q8TC99 324 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 OTULINQ96BN8 352 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 ZC3HAV1LQ96H79 300 aaKnown RBP11.22□□□□□ -0.61
SHMT2-227ENST00000557269 BOD1Q96IK1 185 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 SLC38A2Q96QD8 506 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 PITX2Q99697 317 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 SH3GL3Q99963 347 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 SEC61A2Q9H9S3 476 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 SLC17A5Q9NRA2 495 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 ZNF226Q9NYT6 803 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 ZNF224Q9NZL3 707 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 FKBP7Q9Y680 259 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 SH3D21A4FU49 640 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 SLC16A6O15403 523 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 TLX2O43763 284 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-227ENST00000557269 TFP02787 698 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 GAAP10253 952 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 NR2C1P13056 603 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 LAP3P28838 519 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 CRABP1P29762 137 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 CENPAP49450 140 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 SH3BGRP55822 239 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-227ENST00000557269 ADARB1P78563 741 aaKnown RBP11.21□□□□□ -0.61
SHMT2-227ENST00000557269 MRPS34P82930 218 aaKnown RBP11.21□□□□□ -0.61
SHMT2-227ENST00000557269 TGFBR3Q03167 851 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 TAB1Q15750 504 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 LINC01590Q5TEZ4 76 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 OR7E24Q6IFN5 339 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 ALKBH2Q6NS38 261 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 B3GLCTQ6Y288 498 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 CXXC5Q7LFL8 322 aaKnown RBP11.21□□□□□ -0.61
SHMT2-227ENST00000557269 GLB1L2Q8IW92 636 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 DMRTC2Q8IXT2 367 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-227ENST00000557269 LRRC18Q8N456 261 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 FAM81AQ8TBF8 368 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 TMEM163Q8TC26 289 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 LRRC46Q96FV0 321 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 PLEKHA8Q96JA3 519 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 RDH12Q96NR8 316 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 C1QTNF6Q9BXI9 259 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 TEX12Q9BXU0 123 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 RACGAP1Q9H0H5 632 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 OR10A4Q9H209 315 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 OR51V1Q9H2C8 321 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 NOX3Q9HBY0 568 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 EMC7Q9NPA0 242 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 POLE4Q9NR33 117 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 GMPPBQ9Y5P6 360 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 SLC25A15Q9Y619 301 aa11.21□□□□□ -0.61
SHMT2-227ENST00000557269 CCDC182A6NF36 153 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 TVP23AA6NH52 213 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 TUBAL3A6NHL2 446 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 PRR23D1E9PI22 279 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-227ENST00000557269 HLA-HP01893 362 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 GNAO1P09471 354 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 PRR23D2P0DMB1 279 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-227ENST00000557269 OR8G3PP0DMU2 310 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 PSKH1P11801 424 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 SLC2A5P22732 501 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 PIGFQ07326 219 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 ENDOGQ14249 297 aaKnown RBP11.2□□□□□ -0.62
SHMT2-227ENST00000557269 TIMM23BQ5SRD1 257 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 FAM27BQ5VT28 67 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 AADACL4Q5VUY2 407 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 SP5Q6BEB4 398 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-227ENST00000557269 DNM1P34Q6PK57 102 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 MEX3BQ6ZN04 569 aaKnown RBP11.2□□□□□ -0.62
SHMT2-227ENST00000557269 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-227ENST00000557269 C17orf78Q8N4C9 275 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 DHRSXQ8N5I4 330 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 ZNF511Q8NB15 262 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 PROKR2Q8NFJ6 384 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 SLC26A10Q8NG04 563 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 OR2T4Q8NH00 348 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 CYGBQ8WWM9 190 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 C11orf40Q8WZ69 217 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 FBXO17Q96EF6 278 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 ADI1Q9BV57 179 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 SIAEQ9HAT2 523 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 MRPL22Q9NWU5 206 aaKnown RBP11.2□□□□□ -0.62
SHMT2-227ENST00000557269 B3GNT2Q9NY97 397 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 NPAP1Q9NZP6 1156 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 CRIM1Q9NZV1 1036 aa11.2□□□□□ -0.62
SHMT2-227ENST00000557269 SPTBN1Q01082 2364 aaKnown RBP11.2□□□□□ -0.62
SHMT2-227ENST00000557269 FASNP49327 2511 aaKnown RBP11.19□□□□□ -0.62
SHMT2-227ENST00000557269 UTP20O75691 2785 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms