RNA–Protein interactions for RNA: ENST00000555301.1

CHD8-208, Transcript of chromodomain helicase DNA binding protein 8, human

TSL 2

Gene CHD8, Length 918 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD8-208	ENST00000555301	ARPC4-TTLL3	A0A0A6YYG9	625 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	LOC100130705	A0A1B0GUX0	176 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301		A0A1W2PPL8	197 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	SH3D21	A4FU49	640 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	FAM183A	A6NL82	134 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301		E9PQ18	207 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301		H0YJX3	145 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	DCTN6	O00399	190 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	DLGAP1	O14490	977 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	SLC16A6	O15403	523 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	TLX2	O43763	284 aa	Predicted RBP	12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	SEC14L2	O76054	403 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	WNT11	O96014	354 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	SPI1	P17947	270 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	MSR1	P21757	451 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	GGT2	P36268	569 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	PTDSS1	P48651	473 aa	Known RBP	12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	BLVRA	P53004	296 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	KEAP1	Q14145	624 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	PPA1	Q15181	289 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	TAB1	Q15750	504 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	ETFDH	Q16134	617 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	TTC23	Q5W5X9	447 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	PLBD1	Q6P4A8	553 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	MEX3B	Q6ZN04	569 aa	Known RBP	12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	DPPA2	Q7Z7J5	298 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	DEPDC4	Q8N2C3	294 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	TCEANC	Q8N8B7	351 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	ACBD4	Q8NC06	268 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	PROKR2	Q8NFJ6	384 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	OR8J1	Q8NGP2	316 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	LINC01560	Q8TB33	94 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	FAM81A	Q8TBF8	368 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	TMEM163	Q8TC26	289 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	PTP4A1	Q93096	173 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	OTULIN	Q96BN8	352 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	WFIKKN1	Q96NZ8	548 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	PITX2	Q99697	317 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	KCNN2	Q9H2S1	579 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	NELFA	Q9H3P2	528 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	IMPAD1	Q9NX62	359 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	ZNF226	Q9NYT6	803 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	NDRG4	Q9ULP0	352 aa	Known RBP	12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	MOK	Q9UQ07	419 aa		12.51	□□□□□ -0.41
CHD8-208	ENST00000555301	CASK	O14936	926 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	PRODH	O43272	600 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	PRKY	O43930	277 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	UBL3	O95164	117 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	CDA	P32320	146 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	CAPZA2	P47755	286 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	EFNB1	P98172	346 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	SGCA	Q16586	387 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	FAM27B	Q5VT28	67 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	SP5	Q6BEB4	398 aa	Predicted RBP	12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	CXXC5	Q7LFL8	322 aa	Known RBP	12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	SLC16A14	Q7RTX9	510 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	CPO	Q8IVL8	374 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	DHRSX	Q8N5I4	330 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	WDR31	Q8NA23	367 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	OR9Q1	Q8NGQ5	310 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	OR52N5	Q8NH56	324 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	FAM222B	Q8WU58	562 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	NABP1	Q96AH0	204 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	WAC	Q9BTA9	647 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	NGB	Q9NPG2	151 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	HINT3	Q9NQE9	182 aa	Known RBP	12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	POLE4	Q9NR33	117 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	SLC25A15	Q9Y619	301 aa		12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	INTS1	Q8N201	2190 aa	Known RBP	12.5	□□□□□ -0.41
CHD8-208	ENST00000555301	FLNC	Q14315	2725 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	DIDO1	Q9BTC0	2240 aa	Known RBP	12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	MPZL2	O60487	215 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	HLA-DQA2	P01906	255 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	HRG	P04196	525 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	EPX	P11678	715 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	FMO3	P31513	532 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	PYCR1	P32322	319 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	LSM6	P62312	80 aa	Known RBP	12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	HSF2	Q03933	536 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	SNTB1	Q13884	538 aa	Known RBP	12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	KCNMB1	Q16558	191 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	SLC36A2	Q495M3	483 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	SLC35D3	Q5M8T2	416 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	NXNL2	Q5VZ03	156 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	FBXW10	Q5XX13	1052 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	SKA3	Q8IX90	412 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	ZC3HAV1L	Q96H79	300 aa	Known RBP	12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	SH3GL3	Q99963	347 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	APOL4	Q9BPW4	351 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	ADI1	Q9BV57	179 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	HCAR1	Q9BXC0	346 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	OR51V1	Q9H2C8	321 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	RASSF4	Q9H2L5	321 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	MED20	Q9H944	212 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	CRIM1	Q9NZV1	1036 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	H2AFY2	Q9P0M6	372 aa	Predicted RBP	12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	PLEKHB1	Q9UF11	243 aa	Predicted RBP	12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	KCNN3	Q9UGI6	736 aa		12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	USP9X	Q93008	2570 aa	Predicted RBP	12.49	□□□□□ -0.41
CHD8-208	ENST00000555301	HELZ2	Q9BYK8	2649 aa	Known RBP	12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms