RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 CT55Q8WUE5 264 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 TRUB1Q8WWH5 349 aaKnown RBP1.12□□□□□ -2.23
PRPF39-208ENST00000554785 OR8D1Q8WZ84 308 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 DTNBP1Q96EV8 351 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 VSIG2Q96IQ7 327 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 ZNF414Q96IQ9 312 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 C4orf36Q96KX1 117 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 RPRD1AQ96P16 312 aaPredicted RBP1.12□□□□□ -2.23
PRPF39-208ENST00000554785 TGM7Q96PF1 710 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 ULBP1Q9BZM6 244 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 UCK2Q9BZX2 261 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 FBXO44Q9H4M3 255 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 ASB7Q9H672 318 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 PARVGQ9HBI0 331 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 PALMDQ9NP74 551 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 TNFRSF19Q9NS68 423 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 ZNF275Q9NSD4 429 aaPredicted RBP1.12□□□□□ -2.23
PRPF39-208ENST00000554785 FARSBQ9NSD9 589 aaKnown RBP1.12□□□□□ -2.23
PRPF39-208ENST00000554785 PRR34Q9NV39 138 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 SDAD1Q9NVU7 687 aaKnown RBP eCLIP1.12□□□□□ -2.23
PRPF39-208ENST00000554785 CD84Q9UIB8 345 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 ANAPC7Q9UJX3 599 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 VANGL2Q9ULK5 521 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 SAMD4AQ9UPU9 718 aaKnown RBP1.12□□□□□ -2.23
PRPF39-208ENST00000554785 SMC3Q9UQE7 1217 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 DOCK4Q8N1I0 1966 aa1.12□□□□□ -2.23
PRPF39-208ENST00000554785 TENM1Q9UKZ4 2725 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 EML6Q6ZMW3 1958 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 MED12Q93074 2177 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 DSCAMO60469 2012 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 CR1P17927 2039 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 CADP27708 2225 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 IGLV8-61A0A075B6I0 122 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 A0A0D9SEW6 157 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 HEATR9A2RTY3 570 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 GSAPA4D1B5 854 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 OR1F1O43749 312 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 DPM1O60762 260 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 LCA5LO95447 670 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 CTDNEP1O95476 244 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 LY6G6DO95868 133 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 IGKV3-15P01624 115 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 ZDHHC11BP0C7U3 371 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 THRAP10827 490 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 DRD5P21918 477 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 WARSP23381 471 aaKnown RBP1.11□□□□□ -2.23
PRPF39-208ENST00000554785 BDKRB1P46663 353 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 CCNHP51946 323 aaPredicted RBP1.11□□□□□ -2.23
PRPF39-208ENST00000554785 RPS21P63220 83 aaKnown RBP1.11□□□□□ -2.23
PRPF39-208ENST00000554785 IGLV3-21P80748 117 aaPredicted RBP1.11□□□□□ -2.23
PRPF39-208ENST00000554785 ELP6Q0PNE2 266 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 ST3GAL3Q11203 375 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 KIAA0040Q15053 153 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 IL17AQ16552 155 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 SNRNP35Q16560 246 aaKnown RBP1.11□□□□□ -2.23
PRPF39-208ENST00000554785 NDUFA9Q16795 377 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 PAGE2BQ5JRK9 111 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 ARMC12Q5T9G4 340 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 SPECC1LQ69YQ0 1117 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 SERPINA9Q86WD7 417 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 TRIM69Q86WT6 500 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 TMEM17Q86X19 198 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 GKN2Q86XP6 184 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 TGIF2LYQ8IUE0 185 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 PRSS58Q8IYP2 241 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 SLC34A3Q8N130 599 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 LRRC52Q8N7C0 313 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 CATSPER1Q8NEC5 780 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 CCDC112Q8NEF3 446 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 OR2T33Q8NG76 320 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 OR13F1Q8NGS4 319 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 OR2A12Q8NGT7 310 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 UBA3Q8TBC4 463 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 CXorf40AQ8TE69 158 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 NAT14Q8WUY8 206 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 FAF2Q96CS3 445 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 TSGA13Q96PP4 275 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 KLF6Q99612 283 aaPredicted RBP1.11□□□□□ -2.23
PRPF39-208ENST00000554785 KIR2DL4Q99706 377 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 SLC7A5P2Q9GIP4 190 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 MCCC2Q9HCC0 563 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 LHX9Q9NQ69 397 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 AGPAT4Q9NRZ5 378 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 VNN3Q9NY84 501 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 CGNQ9P2M7 1197 aaKnown RBP1.11□□□□□ -2.23
PRPF39-208ENST00000554785 SUN2Q9UH99 717 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 KLHL21Q9UJP4 597 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 BLOC1S6Q9UL45 172 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 TP53TG3Q9ULZ0 132 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 SCML1Q9UN30 329 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 GSTK1Q9Y2Q3 226 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 PPIAL4AQ9Y536 164 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 SNX10Q9Y5X0 201 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 FLVCR1Q9Y5Y0 555 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 FREM3P0C091 2139 aa1.11□□□□□ -2.23
PRPF39-208ENST00000554785 RAI1Q7Z5J4 1906 aaPredicted RBP1.1□□□□□ -2.23
PRPF39-208ENST00000554785 FREM1Q5H8C1 2179 aa1.1□□□□□ -2.23
PRPF39-208ENST00000554785 MALRD1Q5VYJ5 2156 aa1.1□□□□□ -2.23
PRPF39-208ENST00000554785 IGHV1OR21-1A0A087WYE8 117 aa1.1□□□□□ -2.23
PRPF39-208ENST00000554785 DHRS7CA6NNS2 312 aa1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms