RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 C1orf162Q8NEQ5 155 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-210ENST00000553950 ASB5Q8WWX0 329 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 NANOS1Q8WY41 292 aaKnown RBP12.8□□□□□ -0.36
SHMT2-210ENST00000553950 NSMAFQ92636 917 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 KISS1RQ969F8 398 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-210ENST00000553950 RNFT2Q96EX2 444 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 LRRC46Q96FV0 321 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 TSSK2Q96PF2 358 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 FOXB1Q99853 325 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 COPS4Q9BT78 406 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 RBM24Q9BX46 236 aaKnown RBP12.8□□□□□ -0.36
SHMT2-210ENST00000553950 KCNN2Q9H2S1 579 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 MARCH7Q9H992 704 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 TAS2R16Q9NYV7 291 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 UBAP1Q9NZ09 502 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 POLR1DQ9Y2S0 133 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 COMMD3-BMI1R4GMX3 469 aa12.8□□□□□ -0.36
SHMT2-210ENST00000553950 NCOA6Q14686 2063 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-210ENST00000553950 IGSF10Q6WRI0 2623 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 FAM208BQ5VWN6 2430 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 SMNDC1O75940 238 aaKnown RBP eCLIP12.79□□□□□ -0.36
SHMT2-210ENST00000553950 RAB36O95755 333 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 GAAP10253 952 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 MYL12AP19105 171 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 COX5AP20674 150 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 EEF1B2P24534 225 aaKnown RBP12.79□□□□□ -0.36
SHMT2-210ENST00000553950 DCKP27707 260 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 HOXC12P31275 282 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 SLC15A1P46059 708 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 ENTPD1P49961 510 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 LSM6P62312 80 aaKnown RBP12.79□□□□□ -0.36
SHMT2-210ENST00000553950 ADAM8P78325 824 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 FAPQ12884 760 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 MRPL49Q13405 166 aaKnown RBP12.79□□□□□ -0.36
SHMT2-210ENST00000553950 P2RY6Q15077 328 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 KCNMB1Q16558 191 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 SMN1Q16637 294 aaKnown RBP12.79□□□□□ -0.36
SHMT2-210ENST00000553950 CEACAM16Q2WEN9 425 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 SLC25A35Q3KQZ1 300 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 C4orf17Q53FE4 359 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 LINC01590Q5TEZ4 76 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 VWA1Q6PCB0 445 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 LRFN4Q6PJG9 635 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 ZNF627Q7L945 461 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 SLC16A9Q7RTY1 509 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 ZNF843Q8N446 348 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 STX19Q8N4C7 294 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 RPRMLQ8N4K4 120 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 ZNF454Q8N9F8 522 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 SLC26A10Q8NG04 563 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 OR51G2Q8NGK0 314 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 STARD4Q96DR4 205 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 BBC3Q96PG8 261 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-210ENST00000553950 USB1Q9BQ65 265 aaKnown RBP12.79□□□□□ -0.36
SHMT2-210ENST00000553950 JAM3Q9BX67 310 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 YIPF3Q9GZM5 350 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 ZNF696Q9H7X3 374 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 MOV10Q9HCE1 1003 aaKnown RBP12.79□□□□□ -0.36
SHMT2-210ENST00000553950 CHCHD3Q9NX63 227 aaKnown RBP12.79□□□□□ -0.36
SHMT2-210ENST00000553950 PSORS1C1Q9UIG5 152 aa12.79□□□□□ -0.36
SHMT2-210ENST00000553950 COA3Q9Y2R0 106 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-210ENST00000553950 PRRC2CQ9Y520 2896 aaKnown RBP12.79□□□□□ -0.36
SHMT2-210ENST00000553950 A0A0G2JNJ9 132 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 DCTN6O00399 190 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 RGS10O43665 173 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 SBK2P0C263 348 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 OR2T7P0C7T2 308 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 PAX7P23759 505 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 CHRNB4P30926 498 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 NTF4P34130 210 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 CAPZA2P47755 286 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 PCBD1P61457 104 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 SLC35A2P78381 396 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 FOXF2Q12947 444 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 AQP6Q13520 282 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 TEX30Q5JUR7 227 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 LAIR2Q6ISS4 152 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 AHSA2Q719I0 299 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 SSX8Q7RTT4 187 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 BCDIN3DQ7Z5W3 292 aaKnown RBP12.78□□□□□ -0.36
SHMT2-210ENST00000553950 BTLAQ7Z6A9 289 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 ERI1Q8IV48 349 aaKnown RBP12.78□□□□□ -0.36
SHMT2-210ENST00000553950 WDFY1Q8IWB7 410 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 CCDC36Q8IYA8 594 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 C17orf78Q8N4C9 275 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 SVOPQ8N4V2 548 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 NAXEQ8NCW5 288 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 OR6N2Q8NGY6 317 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 OR2T27Q8NH04 317 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 ZMYND19Q96E35 227 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-210ENST00000553950 WDR76Q9H967 626 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 SEC61A2Q9H9S3 476 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 SIAEQ9HAT2 523 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 ADGRL4Q9HBW9 690 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 VCX3AQ9NNX9 186 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 FGF20Q9NP95 211 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-210ENST00000553950 POLE4Q9NR33 117 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 TMEM38BQ9NVV0 291 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 FKBP14Q9NWM8 211 aa12.78□□□□□ -0.36
SHMT2-210ENST00000553950 Q9UFV3 132 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms