RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CORO6Q6QEF8 472 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 CD163Q86VB7 1156 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 CCDC36Q8IYA8 594 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 RNF113BQ8IZP6 322 aaKnown RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 GABRG1Q8N1C3 465 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF619Q8N2I2 560 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 LRRC25Q8N386 305 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 DMBX1Q8NFW5 382 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 OR2L3Q8NG85 312 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 OR5AP2Q8NGF4 316 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 OR13C8Q8NGS7 320 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 FAM174AQ8TBP5 190 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 TMED6Q8WW62 240 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 RAB40AQ8WXH6 277 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 NR4A3Q92570 626 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 VWCEQ96DN2 955 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 COX14Q96I36 57 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 CMTM3Q96MX0 182 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 SLC6A7Q99884 636 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 NAA11Q9BSU3 229 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF426Q9BUY5 554 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 C1orf198Q9H425 327 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 C14orf105Q9NVL8 296 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 SOHLH2Q9NX45 425 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 CALML5Q9NZT1 146 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 VSIG4Q9Y279 399 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 TMED7Q9Y3B3 224 aa4.4□□□□□ -1.71
LIMA1-214ENST00000552783 ARHGEF17Q96PE2 2063 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-214ENST00000552783 FREM3P0C091 2139 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 KIF26BQ2KJY2 2108 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 A0A0A6YYC8 382 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 FITM1A5D6W6 292 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 MSGN1A6NI15 193 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 COLCA2A8K830 154 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF705EA8MWA4 302 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 F5H0A9 414 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 I3L1I5 382 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 FARS2O95363 451 aaKnown RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 WISP1O95388 367 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ABHD16AO95870 558 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 WNT11O96014 354 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 PLGP00747 810 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CD8AP01732 235 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CISD3P0C7P0 127 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF735P0CB33 412 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 AKAIN1P0CW23 69 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CALCBP10092 127 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 PGAM2P15259 253 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 AQP2P41181 271 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 RPS21P63220 83 aaKnown RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 SQSTM1Q13501 440 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 GGTLC2Q14390 218 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 Q499Y3 187 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 FHL5Q5TD97 284 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ARHGAP40Q5TG30 622 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ANKRD16Q6P6B7 361 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 NRROSQ86YC3 692 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 SVBPQ8N300 66 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 EID2Q8N6I1 236 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 GVQW1Q8N7I0 195 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 OR1M1Q8NGA1 313 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 OR5M8Q8NGP6 311 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 OR10R2Q8NGX6 335 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 OR5AK2Q8NH90 309 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 SLC2A12Q8TD20 617 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 RAB7BQ96AH8 199 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 MOAP1Q96BY2 351 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CMBLQ96DG6 245 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 SEH1LQ96EE3 360 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 RBM18Q96H35 190 aaKnown RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ASB16Q96NS5 453 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 OR2M4Q96R27 311 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 RSRP1Q9BUV0 290 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ALG12Q9BV10 488 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 LMAN2LQ9H0V9 348 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 TMEM27Q9HBJ8 222 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 SRA1Q9HD15 236 aaKnown RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 NIT2Q9NQR4 276 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 BIN3Q9NQY0 253 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 HRASLS2Q9NWW9 162 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 MBD2Q9UBB5 411 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF629Q9UEG4 869 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 TBC1D29Q9UFV1 150 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CDV3Q9UKY7 258 aaKnown RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 MAFFQ9ULX9 164 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 DTX4Q9Y2E6 619 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ENTPD2Q9Y5L3 495 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 A0A1W2PPC1 479 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 KANTRA0A1W2PQU2 76 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 URADA6NGE7 173 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 OR4C45A6NMZ5 311 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 C17orf51A8MQB3 221 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 B4DGG1 531 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 EEF1E1-BLOC1S5C9J1V9 151 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 AGPAT2O15120 278 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 FGF17O60258 216 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ITGA10O75578 1167 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 KLF8O95600 359 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 HLA-AP01891 365 aaKnown RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 HLA-DQA2P01906 255 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms